Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0182400.3

Overview

Field	Value
Gene ID	LotjaGi5g1v0182400
Transcript ID	LotjaGi5g1v0182400.3
Related isoforms 2	LotjaGi5g1v0182400.1 LotjaGi5g1v0182400.2
Lotus japonicus genome version	Gifu v1.2
Description	Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp\|Q9ZTP3\|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr\|A0A0L9VBM8\|A0A0L9VBM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:46465492..46466053) extracted from Lotus japonicus Gifu genome v1.2.

CTACTGTGTCATTCTGCAGTTGATGCAAGGGAACATATGGTTGGTACCATATGCTCATGGTTTTCCTCAAAGCATGTCAC TCCTCCTTCGGTTTCAATTACGGCCGTCCATTGCCATAGCCATCTCTGAACCTGGAGAGTCTTCAGAACGTACCGGTTCC AATTCAATGTTGAGCGGGCTGCAAGTTCTGTTAGTTGACAATGATGATGTAAATAGAGCAGTGACCCAAAGATTGCTTCA GAAACTAGGTTGTGTGGTAACTTCTGTTTCTTCAGGACTTGAGTGCCTTACTTTCATTGGACATGCTGGATCTCCCATTC AAGTCATTCTTTTGAATCTTCAAATGGATGATTTAGAAGGCTTTGAAGTCGCCACAAGGATTCGGAAATTTAGAAGCCGA AATTGGCCTGTGATTGTTGCCTTGACTTCGAGTGCAGAAGAAGATTTGTGGGAAAGATGCATGCAAAGTGGTATTAGCGG AGTTATCCGAAAACCGGTTTTGTTGCAAGGCATTGCTGGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTGCTGT GA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0182400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGGGAACATATGGTTGGTACCATATGCTCATGGTTTTCCTCAAAGCATGTCACTCCTCCTTCGGTTTCAATTACG GCCGTCCATTGCCATAGCCATCTCTGAACCTGGAGAGTCTTCAGAACGTACCGGTTCCAATTCAATGTTGAGCGGGCTGC AAGTTCTGTTAGTTGACAATGATGATGTAAATAGAGCAGTGACCCAAAGATTGCTTCAGAAACTAGGTTGTGTGGTAACT TCTGTTTCTTCAGGACTTGAGTGCCTTACTTTCATTGGACATGCTGGATCTCCCATTCAAGTCATTCTTTTGAATCTTCA AATGGATGATTTAGAAGGCTTTGAAGTCGCCACAAGGATTCGGAAATTTAGAAGCCGAAATTGGCCTGTGATTGTTGCCT TGACTTCGAGTGCAGAAGAAGATTTGTGGGAAAGATGCATGCAAAGTGGTATTAGCGGAGTTATCCGAAAACCGGTTTTG TTGCAAGGCATTGCTGGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTGCTGTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0182400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQGNIWLVPYAHGFPQSMSLLLRFQLRPSIAIAISEPGESSERTGSNSMLSGLQVLLVDNDDVNRAVTQRLLQKLGCVVT SVSSGLECLTFIGHAGSPIQVILLNLQMDDLEGFEVATRIRKFRSRNWPVIVALTSSAEEDLWERCMQSGISGVIRKPVL LQGIAGELRRILMQGNNVL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR43719 View details on PTHR43719 Search for proteins/transripts with this domain View external data on PTHR43719	1	174	174	9.8E-71	–
PANTHER	PTHR43719:SF36 View details on PTHR43719:SF36 Search for proteins/transripts with this domain View external data on PTHR43719:SF36	1	174	174	9.8E-71	–
Gene3D	G3DSA:3.40.50.2300 View details on G3DSA:3.40.50.2300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2300	36	172	137	2.9E-28	–
SUPERFAMILY	SSF52172 View details on SSF52172 Search for proteins/transripts with this domain View external data on SSF52172	50	172	123	2.99E-27	IPR011006 Show description in modal box View details on IPR011006 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00448 View details on SM00448 Search for proteins/transripts with this domain View external data on SM00448	53	172	120	1.7E-19	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50110 View details on PS50110 Search for proteins/transripts with this domain View external data on PS50110	54	172	119	32.135	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00072 View details on PF00072 Search for proteins/transripts with this domain View external data on PF00072	55	160	106	2.5E-18	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00156 View details on cd00156 Search for proteins/transripts with this domain View external data on cd00156	56	172	117	2.33485E-23	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000160 View details of GO:0000160 AmiGO InterPro QuickGO	Biological process	Phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.	Subterm of View details of GO:0035556

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0182400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…