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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0194100 |
| Transcript ID | LotjaGi5g1v0194100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin; TAIR: AT3G22930.1 calmodulin-like 11; Swiss-Prot: sp|Q9LIK5|CML11_ARATH Calmodulin-like protein 11; TrEMBL-Plants: tr|I3SRG2|I3SRG2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0194100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48871262..48872334) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTGTTACTTTGATTAATAGGGTGCATTACTGTGGAAGAACTTGCCACTGTGATTCGGTCATTGGATCAAAACCCCA CTGAAGAAGAGCTCCAGGACATGATAACCGAAGTCGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAAC TTGATGGCCAGGAAAATCAAAGTAATTATGTTCCTTATTTCTTTTCCATTATAGTAGTACATACTACATAGTCCCAATAC CAAAATTGTACTTATTTGTTAAAATCTAATTAGTCAAGTTCTTCTGTGTTCTGTTCCATTTAGGACACTGATGCAGAGGA GGAGCTCAAAGAGGCTTTCAAGGTTTTTGACAAAGATCAAAATGGCTATATATCAGCCACTGAGGTATACATTATATACA TATTTTCATTTTTGGTTGTGCTTTTCTTTCTTTAATGGTTATGTCCTTCCAACTCTTCATTAACACCCATAAAAATTTTC TTGATATTTATTGGCAAAATTTTCAATTTCATGTAATTAAGCATAACAAATGAAGAGTCTATATCTCATTGTTTACCTGA TAATTCATGACAGAGTTTTCATTTTCCCATTAAAAAGTTAATTTTAGCTACATACAACTCATCAGTACTGCAAATTTCAT TTTATTAATGTGAATTTGTTATTTGATAAATGATAAGCACATCTAGGAAAGTACACCGTACGTTTCTCGTGCAAAGGTAT TAGCTGTTTGATTAGAAAATGCAACGGGGTTTGACATTCATTTGAGTGTTGCAGAGAATCTACCATTTTTTTTTTATTCT CTCTCAAAATCAATTCTGGCGAGAAGTTCAAATGAGTAAATTCGGAATGTTAGAATTGATTATAAGGAAATAGAATTTGT CTAAACATGCTATTAGTCTCATATGTGATGGTAACATATTTCTGTCTTTGTGCAGTTGAGACATGTGATGATCAATCTAG GTGAAAAACTAACCGATGAGGAGGTAGAGCAGATGATTAAAGAAGCAGATTTGGATGGTGATGGTCAAGTTAACTATGAT GAATTTGTCAAGATGATGATGACTGTTCGATGA
CDS sequence (LotjaGi5g1v0194100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACCGAAGTCGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAACTTGATGGCCAGGAAAATCAA AGACACTGATGCAGAGGAGGAGCTCAAAGAGGCTTTCAAGGTTTTTGACAAAGATCAAAATGGCTATATATCAGCCACTG AGTTGAGACATGTGATGATCAATCTAGGTGAAAAACTAACCGATGAGGAGGTAGAGCAGATGATTAAAGAAGCAGATTTG GATGGTGATGGTCAAGTTAACTATGATGAATTTGTCAAGATGATGATGACTGTTCGATGA
Protein sequence (LotjaGi5g1v0194100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITEVDADGNGTIEFDEFLNLMARKIKDTDAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDEEVEQMIKEADL DGDGQVNYDEFVKMMMTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 98 | 98 | 9.8E-57 | – | |
| ProSiteProfiles | 1 | 28 | 28 | 11.724 | ||
| SMART | 1 | 25 | 25 | 0.036 | ||
| Pfam | 1 | 24 | 24 | 9.6E-7 | ||
| SUPERFAMILY | 1 | 97 | 97 | 1.42E-37 | ||
| PANTHER | 1 | 98 | 98 | 9.8E-57 | – | |
| Gene3D | 1 | 59 | 59 | 3.7E-30 | – | |
| CDD | 6 | 59 | 54 | 4.21209E-9 | ||
| ProSitePatterns | 6 | 18 | 13 | - | ||
| ProSiteProfiles | 30 | 65 | 36 | 16.912 | ||
| Pfam | 32 | 95 | 64 | 7.9E-20 | ||
| SMART | 34 | 62 | 29 | 3.1E-7 | ||
| CDD | 34 | 96 | 63 | 2.24735E-22 | ||
| ProSitePatterns | 43 | 55 | 13 | - | ||
| Gene3D | 60 | 96 | 37 | 1.5E-16 | – | |
| ProSiteProfiles | 66 | 99 | 34 | 14.402 | ||
| SMART | 70 | 98 | 29 | 6.6E-8 | ||
| ProSitePatterns | 79 | 91 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi5g1v0194100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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