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LotjaGi5g1v0208000.1

Overview

Field Value
Gene ID LotjaGi5g1v0208000
Transcript ID LotjaGi5g1v0208000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Dihydroorotase; TAIR: AT4G22930.1 pyrimidin 4; Swiss-Prot: sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial; TrEMBL-Plants: tr|A0A0R0JV11|A0A0R0JV11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0208000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:50984413..50989270) extracted from Lotus japonicus Gifu genome v1.2.

CTAATTTTAATTCATTATGGGTTAGTAACCGTTTAAAACTTGTTTCACGTTTTCAGCCGTCTGCGTTTACACATTTTCAG AGTTTTCACTTGGTTGCTTCCATTACCTGCTCAGATTTGTTCGACCACACGCGAAGTTCCACGAACGAAGCTCACCCTTC TCCGCCGCCGTGCGCTTCTCCGGCGATCAGGTCCGAAGCCACTGATTCTCCTCCAACATCGTTGAAGGCATTAACCACCT ATTCTACGCCACCGTCACCTCCGATTTATGGATGCTTTGCTATAATGTCGCTGATTTTCTTCTCTTTCGACACGATTCGG TTTCTACCATTAAGGTAATGCTTAGATCTGAGGTTAGGCTTTTAGATCCATTCGTTGTTCGATTTAATCGTTCAATTTTG GCTTTCGTATTGTGTGAGTATCACGGAATGGTTCAGTTGCAGTGAAAGGGAGTATCATAGAGGGGACAAGATTGCTTTGT CGTGGACGGTGATAAAATTGCTCAAAATGAGTACAATCTAGCTACTGCTTATGCATTTGGTATTGTATTGTGGTTCTTTT GTTATTAGTTTTTATTGATTTTCTTGGAACTGGTTTTCTGATCAGTCAATGAGTCTTGGACTGGGAAATTGGCATGACTT TGGTTTTGCATTTATGTAGAAACTAGAACTTCTGGATGTTAATCTTAGAATTATGACTTTATCCATTGCAGATAGAGTTT TTGGACTACATTCCAATTTAGAAGTGGTGTATCAAGTTGCAGCCATACCTGTGGTGGAGGCTGCCCATAGAGGGCATCAA TGGTATGAAGTCTTGTTGATCCTTGGATTCTATTAAATGTCCTTATGTTTCTCCTATCCTCCTTTTTGAAGTACAGAGAA ACCTTGTTATCTTAGTTTAAATTGAAGAAACAAAATTCTTAAACAAGTTAATTCTTTATTAAATTCTGAATTAATTATTT AAACAAAACCTTATAAATGAAGGGACTTAAATTTTCAAATACATAATCCAAACACAGGATAAAGGTTTTCCCTCGCAGAG TTAGTTTCCAATTCTTCATTTCAGTTCCTTTTCCTTTATTGCGCCTTATATTTTGTTCTTCTTTAAATCTTAGTTGTCCT ACCATGTACCGACTATATCTACTTTAGTTCTTCTAATCAAGTTTTCCTCAATCAAAATGACTACCCCCTCACTGTTCTTG CCTTTCACCAAGTTTGACATTTTCTTCATCCTTTGTTTTAAGAAAAAGATAGTATCAGTAATTTTTTGCTATTGTATTTT ATTTGACAATAACTGTAGACAAGGAAAGACATTGATTTGAAAGGAGTTAATCAGACTGGAGAAAGGTTGGATAGAATAGG CACAACACTTTCCTCGCCTGATAATTCTGCTAGGGCTTATTTGGTTGTTACCCTTCTGTTATAGGTATTAAGGTTCTAAT ATAGAAGATTGATAAGGACAACGATGGAGCTCACTATTGTTCAACCTGATGATTGGCATCTTCACCTTCGTGATAGTGCC CTCCTTGAAGCTGTCATCCCTCACAGGTCATTTCGCTTGTTATAGGAAAAATACTCCATGATATTCTGTTATTTCCTAAT TTTTTGTGGGGTCAATGTAAGGAATACTTGCACACATCACATTTTTATAGTTTGGTGTTCATTTTTTTACTGCATTCTAA ATGATATTTACAAGTATTCTGATTCATAACTATCACTCCCACAGTGCAAAGCATTTTGGAAGGGCTATAGTAATGCCGAA TTTGAAACCACCCATCACCACCACAGCTGCTGCTATTGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAAATAGCA ACTTCACTCCTCTGATGACACTTTACCTAACAGATATGACAACTCCTGATGAGATTAAACTTGCAAGTGAGTCTAATAAG TGGGTTAGGCAAATTTAAGAAATATTACCAATGAAATATGAAAAGGAGAAAACTTTAGCTGTGTCAGTAAATTTAATTTG TCTAATATACTTTTATATTTGTAAGTTTTGCTCTGAATCCAGTTAAATGAAAATTCTGTTATCTTCTTTTACCTTGTAGG CTGTAGCTTTTACTTCTTATTGACCAGTCTGTATTTATTGTGTATGATGATGTCCGTTCAATCCACTGACAAATTTCTTT CCTGTTGGCAATGACAATCAATAATCATTTATCATTTTATTAGATCACACTCTCTTTGTCAATCCACCTTTGACCATTTT TATTGTGTAGTAATATAGTGCACTACTTAACGATGGTGCTTGCATTTACAGAAAAAAGTGGAGTTGTTTATGGTGTGAAG TTGTATCCTGCTGGTGCAACAACAAACTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTTCTTCATGA AATGGTTGAGCAAGATTTACCATTATTGGTAATTTATTTATTTTTAATTGTAGCTCTGTTATGTTTCTTTCTTTATATTG TCTCTCCTTTCCCCAATTTTTCATTTGTTAGTGTGTGTGAGAGATTATATTTGTAGTTGAACGTATTATTTTGGACACAG ATTTTAGAGCTGGTACAAATGAAAATATATACAACTCTTCAATACTTAACTATGAGCTGGGTGGTGCTTATGGCAAGCCA ACCATGGCCCAGTGACATGTTTCCTTCTTTATGTATGTTCTTATTTATATATATCTACTCAAAACTTGTATTGTGCATTT TTATATGTGAATCAATATCCATGACAGGTTCATGGAGAGGTTACAAATCCAGAAGTTGATGTTTTTGACCGGGAAAAGGT CTTCATTGAAACTATCTTAGAGCCTTTAGTTCAAAGGCTTCCACAGCTGAAGGTTGTGATGGAGCATATTACCACCATGG ATGCTGTTAAATTTGTAGAATCTTGCAAAGAAGGTATTGTAATAAAATACATGTGAGAGCCTGTGTCATAGTATTCTACT GGCCAGATGTAAAATCCTCATGATTTGCTATTTTTTTAGGCAATGTTGCAGCAACTGTTACACCACAGCATCTTTTTCTC AATCGTAATGCTTTGTTCCAAGGTGGCTTACAACCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGTAT GTAATTTTGATTTATGATTTCTTTCCCATACTGCCTAGAAAGTTTCAAGTTTCAACATATTGTAGGTTTTCTAGTGAACT TTTTGGTTGAGATTTTGAAATAATGATTCAGTGACAAATTTTAAGAACTTGAAGTAATGATTTAAAAGTTATGAATTAGA TTTCTCTTCTGGTGTTATGTTGTCTTAAGTAAATTAATCAGATTCCTGATTTATCTGACTTGTATGGGAAAAGAGAAATA TGTTCGTAGCACATTGAATGGTCTTTGAAGTTTGAGCATCATTATTCTTCTGTAAATTTTAACTTGGCTGCAGAGAATAC ACAATCTGATTGAATAGTTTTAGACTTGATTGACTAATTCTAAGTTAGTTTAAATAAATGTCACTGAGGAATGAGGACAA GGATCATCTTTTAGACAAGTCTGTTACCGAACTGTACATGTCTTGTCATCTTATCTTGAAGCTCACTTTCTTTAGTCCTT TTTTAGGACAGGCCATTGTTTCAGCTGTCACTGGTGGAAGTACACGGTTTTTCCTTGGAACTGATAGTGCTCCACATGAT AGGCGTAACAAGGAATGTTCGTGTGGATGTGCTGGCATATACAACTCCCTGGTTGCTCTATCCATATATGCGAAGGTTTT TGAAGAGGTAACACTTATTGTAATGCTTGTAATATAATATGCCAAAGTTGGTATTAGTGTATTCTTTTCACAAAAGCGCA TTTGGGGGGTTGAACTGGGATATATGCTTGAGTTTTCAAGATTAATCAGCATTTAGAATCTTGTTCTGCATGCTTCCTAC TGAAAGTGTGAGGAGTTTAATCTTTATGTCTTATGAAATTGTTGTTTTATAGGCCGGTGCACTTGACAAGCTGGAGGCTT TTACAAGTTTTAACGGACCTGACTTCTACGGCCTCCCCAGGAACAAGCTAAAGATTAAACTGAGGAAAGCTCCATGGAGA GTTCCTGAGTATTTGTCATTTCCATTCGGAGATATTGTTCCCATGTGTGCTGGTCAAACACTTGAATGGGAGGCGTTGCT TAATTAAGTGGTGTGTCTATTTGAAAGTTTGGTATCTTCAAGCTTAAATTAGTGGTTCTTGAGATGAGAATTTATGTAGA GTTCTGAACTTTGATCAGTTAATTCTGTTTTGAACTCTACAGATTTCTTGCAGATAAATGTTGTTTGTAGACTTATATTT TTTTTTGGATAGGCTATTGTACACTTATATTTATCTGCTTTCTGTTCAACTTTTACATGGAAATTATTGATGCTATCCAG ACATAAATTTGAAATTCCAGGTCCATTGTCGTTGACATAATGCTAGCTAACAGGGAATATGTGAGGAATAAGTGGAAAAG AGAATGCTACTTGGATCGCTATAGTTGCATAACGTAATTTCTCCTGTTTCTTGGCATTACTGTTTTGCTGAAAATTACAA TTGGTAAGTTGTTTGAGATTTTCGAAAATCAAGAATGAAACTCCAATACTTTGATTTTTTTTTAGAATGGTATCAATAAT CAGAGCATTAGAAGTTTTGTGAAGCAAAGCAAGTTGATTATGTTACTGTTGTAATTATTCATCGCCCATATTTTCAACAT TCCACAACAAAATTTCTTTAGACTCATAATAAAGTGAGAGTTTAGTCAACATTTCCAAATATCAAGGTCTTCACAAAGAA ACATGAACGTCCTTATCACTTTCAGTACAACCCACATTTTAATTAATTAAGAAAACAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0208000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTCACTATTGTTCAACCTGATGATTGGCATCTTCACCTTCGTGATAGTGCCCTCCTTGAAGCTGTCATCCCTCA CAGTGCAAAGCATTTTGGAAGGGCTATAGTAATGCCGAATTTGAAACCACCCATCACCACCACAGCTGCTGCTATTGCTT ATCGAGAGTCCATTTTGAAAGCAATACCTAAAAATAGCAACTTCACTCCTCTGATGACACTTTACCTAACAGATATGACA ACTCCTGATGAGATTAAACTTGCAAAAAAAAGTGGAGTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCAACAACAAA CTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTTCTTCATGAAATGGTTGAGCAAGATTTACCATTAT TGGTTCATGGAGAGGTTACAAATCCAGAAGTTGATGTTTTTGACCGGGAAAAGGTCTTCATTGAAACTATCTTAGAGCCT TTAGTTCAAAGGCTTCCACAGCTGAAGGTTGTGATGGAGCATATTACCACCATGGATGCTGTTAAATTTGTAGAATCTTG CAAAGAAGGCAATGTTGCAGCAACTGTTACACCACAGCATCTTTTTCTCAATCGTAATGCTTTGTTCCAAGGTGGCTTAC AACCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCCATTGTTTCAGCTGTCACTGGTGGAAGT ACACGGTTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAACAAGGAATGTTCGTGTGGATGTGCTGGCATATA CAACTCCCTGGTTGCTCTATCCATATATGCGAAGGTTTTTGAAGAGGCCGGTGCACTTGACAAGCTGGAGGCTTTTACAA GTTTTAACGGACCTGACTTCTACGGCCTCCCCAGGAACAAGCTAAAGATTAAACTGAGGAAAGCTCCATGGAGAGTTCCT GAGTATTTGTCATTTCCATTCGGAGATATTGTTCCCATGTGTGCTGGTCAAACACTTGAATGGGAGGCGTTGCTTAATTA A
Download CDS Sequence

Protein sequence (LotjaGi5g1v0208000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELTIVQPDDWHLHLRDSALLEAVIPHSAKHFGRAIVMPNLKPPITTTAAAIAYRESILKAIPKNSNFTPLMTLYLTDMT TPDEIKLAKKSGVVYGVKLYPAGATTNSQDGVTDIFGKCYSVLHEMVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEP LVQRLPQLKVVMEHITTMDAVKFVESCKEGNVAATVTPQHLFLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTGGS TRFFLGTDSAPHDRRNKECSCGCAGIYNSLVALSIYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKLKIKLRKAPWRVP EYLSFPFGDIVPMCAGQTLEWEALLN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001237
1 345 345 3.5E-146
IPR004721
PANTHER
PTHR43137:SF2
1 343 343 1.9E-215 –
PANTHER
PTHR43137
1 343 343 1.9E-215
IPR004721
Hamap
MF_00219
1 344 344 46.297
IPR004721
TIGRFAM
TIGR00856
2 342 341 1.3E-142
IPR004721
Gene3D
G3DSA:3.20.20.140
2 344 343 3.2E-109 –
SUPERFAMILY
SSF51556
2 342 341 1.45E-140
IPR032466
CDD
cd01294
3 341 339 0.0
IPR004721
Pfam
PF01979
10 307 298 1.7E-25
IPR006680
ProSitePatterns
PS00483
246 257 12 -
IPR002195

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004151
Molecular function Dihydroorotase activity Catalysis of the reaction: (S)-dihydroorotate + H(2)O = N-carbamoyl-L-aspartate + H(+).
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0016812
Molecular function Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide.
Subterm of
GO:0019856
Biological process Pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0208000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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