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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0220100 |
| Transcript ID | LotjaGi5g1v0220100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT1G54870.2 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q5KTS5|GRDH_DAUCA Glucose and ribitol dehydrogenase; TrEMBL-Plants: tr|W9S0I6|W9S0I6_9ROSA Glucose and ribitol dehydrogenase-1-like protein; Found in the gene: LotjaGi5g1v0220100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52650283..52651503) extracted from Lotus japonicus Gifu genome v1.2.
TTCCCCCCACAAAAACAAGATGCACAGCCTGGGAAGGAACATGTTATGGATCCAGTACCCCAGTTCACTAACCCTGACTA CAAACCATCAAATAAACTTCAAGTATACACATTTTATACATTGTTTTTCTATTGTAATTGTAAACTATAATTTGATAAAA TTGATTCTTTTTTCTTGTTTGATTTGTTTGCTGTGTTGATTTTCAGGGGAAGATAGCAGTGATCACAGGGGGTGACTCTG GGATTGGAAGAGCTGTGTGCAACTTGTTTGCCTTAGAAGGTGCTACTGTGGCCTTCACATATGTGAAGGGGAGTGAGGAC AAGGACGCGAGGGACACACTTGAAATGATCAAGAAGGCCAAAACTGCGGGTGCTAAAGATCCACTGGCCATTCCAGCTGA CTTGGGTTTTGATGAGAACTGCAAGAAAGTGGTGGATGAAGTTGTGAAAGCCTATGGCCAAATTGACATTCTGATCAACA ATGCAGCAGAGCAATATGAGTGTGCATCAGTGGAAGAGATTGATGAGAAAAGGCTTGAGAGGGTGTTCAGAACAAATATC TTCTCCTATTTCTTCATGACAAGGTGAGTAGGATGGACTTTTTTCCTCATTTCTTGGGTAAGCACAAGTATCCTCCATCT GAGGCCACCTAGCTTCAGAAGGTCTTTTTTTTTTTTTTTAATTTACAAGGAGATTTATTATATTTTTCTATGGAGGGCGA AGAAAATGTGTTGATATTATAAATGTGTAATTTAGGCATGCCTTGAAGCACATGAAGGAAGGAAGCAGCATTATCAACAC CACATCAGTGAATGCATACAAGGGAAATGCAAAACTACTGGACTACACATCCACCAAGGGTGCAATTGTGGCATTTACAA GAGGTCTCTCCCTTCAGCTGGTGAGTAAGGGAATAAGGGTTAATGGTGTGGCGCCTGGACCTATCTGGACTCCATTAATA CCAGCATCTTTCAAGGAGGAAGAAACTTCTCAATTTGGTGGGCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGT TGCTCCATCCTATGTGTTTCTTGCCTGCAACGCATGCTCTTCTTACATATCTGGACAAGTCCTACACCCTAATGGTAAGA ATCAAATGCTTCTGCACCAGAATCATGATGTGCACATTGACTGTGTCAGTTTACTAACATGGTAACTTGTTTTTTCAGGT GGAAACGTCGTGAATGCTTGA
CDS sequence (LotjaGi5g1v0220100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAGTACCCCAGTTCACTAACCCTGACTACAAACCATCAAATAAACTTCAAGGGAAGATAGCAGTGATCACAGG GGGTGACTCTGGGATTGGAAGAGCTGTGTGCAACTTGTTTGCCTTAGAAGGTGCTACTGTGGCCTTCACATATGTGAAGG GGAGTGAGGACAAGGACGCGAGGGACACACTTGAAATGATCAAGAAGGCCAAAACTGCGGGTGCTAAAGATCCACTGGCC ATTCCAGCTGACTTGGGTTTTGATGAGAACTGCAAGAAAGTGGTGGATGAAGTTGTGAAAGCCTATGGCCAAATTGACAT TCTGATCAACAATGCAGCAGAGCAATATGAGTGTGCATCAGTGGAAGAGATTGATGAGAAAAGGCTTGAGAGGCTGGTGA GTAAGGGAATAAGGGTTAATGGTGTGGCGCCTGGACCTATCTGGACTCCATTAATACCAGCATCTTTCAAGGAGGAAGAA ACTTCTCAATTTGGTGGGCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGTTGCTCCATCCTATGTGTTTCTTGC CTGCAACGCATGCTCTTCTTACATATCTGGACAAGTCCTACACCCTAATGGTGGAAACGTCGTGAATGCTTGA
Protein sequence (LotjaGi5g1v0220100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPVPQFTNPDYKPSNKLQGKIAVITGGDSGIGRAVCNLFALEGATVAFTYVKGSEDKDARDTLEMIKKAKTAGAKDPLA IPADLGFDENCKKVVDEVVKAYGQIDILINNAAEQYECASVEEIDEKRLERLVSKGIRVNGVAPGPIWTPLIPASFKEEE TSQFGGQVPMKRAGQPIEVAPSYVFLACNACSSYISGQVLHPNGGNVVNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 132 | 132 | 1.1E-115 | – | |
| Gene3D | 1 | 130 | 130 | 2.5E-28 | – | |
| PANTHER | 1 | 132 | 132 | 1.1E-115 | – | |
| SUPERFAMILY | 19 | 206 | 188 | 4.97E-42 | ||
| Pfam | 21 | 133 | 113 | 2.1E-17 | ||
| PRINTS | 22 | 39 | 18 | 1.2E-20 | ||
| PANTHER | 131 | 210 | 80 | 1.1E-115 | – | |
| Gene3D | 131 | 209 | 79 | 1.8E-16 | – | |
| PANTHER | 131 | 210 | 80 | 1.1E-115 | – | |
| PRINTS | 135 | 152 | 18 | 1.2E-20 | ||
| PRINTS | 169 | 189 | 21 | 1.2E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0220100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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