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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0220100 |
| Transcript ID | LotjaGi5g1v0220100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT1G54870.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9FZ42|GRDH1_ARATH Glucose and ribitol dehydrogenase homolog 1; TrEMBL-Plants: tr|I3SYP3|I3SYP3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0220100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52650283..52651706) extracted from Lotus japonicus Gifu genome v1.2.
ACCGCGTGGCATATTCAAACCCACGTGTATGTTCACCCGCTCACTCTGTTCATCCCCAAGATCTTTAACATCCATATCCA CATTCTACTTTCCTTCCAAGAAAACCCACTTGAACTTGACAAAAACTCACTTTCCAACTTTTCAGAACCCTCATACAAGT TCCTAAGACCTTGTTTGTAAGAATGGCTTCTGGTGAACAGAAATTCCCCCCACAAAAACAAGATGCACAGCCTGGGAAGG AACATGTTATGGATCCAGTACCCCAGTTCACTAACCCTGACTACAAACCATCAAATAAACTTCAAGTATACACATTTTAT ACATTGTTTTTCTATTGTAATTGTAAACTATAATTTGATAAAATTGATTCTTTTTTCTTGTTTGATTTGTTTGCTGTGTT GATTTTCAGGGGAAGATAGCAGTGATCACAGGGGGTGACTCTGGGATTGGAAGAGCTGTGTGCAACTTGTTTGCCTTAGA AGGTGCTACTGTGGCCTTCACATATGTGAAGGGGAGTGAGGACAAGGACGCGAGGGACACACTTGAAATGATCAAGAAGG CCAAAACTGCGGGTGCTAAAGATCCACTGGCCATTCCAGCTGACTTGGGTTTTGATGAGAACTGCAAGAAAGTGGTGGAT GAAGTTGTGAAAGCCTATGGCCAAATTGACATTCTGATCAACAATGCAGCAGAGCAATATGAGTGTGCATCAGTGGAAGA GATTGATGAGAAAAGGCTTGAGAGGGTGTTCAGAACAAATATCTTCTCCTATTTCTTCATGACAAGGTGAGTAGGATGGA CTTTTTTCCTCATTTCTTGGGTAAGCACAAGTATCCTCCATCTGAGGCCACCTAGCTTCAGAAGGTCTTTTTTTTTTTTT TTAATTTACAAGGAGATTTATTATATTTTTCTATGGAGGGCGAAGAAAATGTGTTGATATTATAAATGTGTAATTTAGGC ATGCCTTGAAGCACATGAAGGAAGGAAGCAGCATTATCAACACCACATCAGTGAATGCATACAAGGGAAATGCAAAACTA CTGGACTACACATCCACCAAGGGTGCAATTGTGGCATTTACAAGAGGTCTCTCCCTTCAGCTGGTGAGTAAGGGAATAAG GGTTAATGGTGTGGCGCCTGGACCTATCTGGACTCCATTAATACCAGCATCTTTCAAGGAGGAAGAAACTTCTCAATTTG GTGGGCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGTTGCTCCATCCTATGTGTTTCTTGCCTGCAACGCATGC TCTTCTTACATATCTGGACAAGTCCTACACCCTAATGGTAAGAATCAAATGCTTCTGCACCAGAATCATGATGTGCACAT TGACTGTGTCAGTTTACTAACATGGTAACTTGTTTTTTCAGGTGGAAACGTCGTGAATGCTTGA
CDS sequence (LotjaGi5g1v0220100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTGGTGAACAGAAATTCCCCCCACAAAAACAAGATGCACAGCCTGGGAAGGAACATGTTATGGATCCAGTACC CCAGTTCACTAACCCTGACTACAAACCATCAAATAAACTTCAAGGGAAGATAGCAGTGATCACAGGGGGTGACTCTGGGA TTGGAAGAGCTGTGTGCAACTTGTTTGCCTTAGAAGGTGCTACTGTGGCCTTCACATATGTGAAGGGGAGTGAGGACAAG GACGCGAGGGACACACTTGAAATGATCAAGAAGGCCAAAACTGCGGGTGCTAAAGATCCACTGGCCATTCCAGCTGACTT GGGTTTTGATGAGAACTGCAAGAAAGTGGTGGATGAAGTTGTGAAAGCCTATGGCCAAATTGACATTCTGATCAACAATG CAGCAGAGCAATATGAGTGTGCATCAGTGGAAGAGATTGATGAGAAAAGGCTTGAGAGGGTGTTCAGAACAAATATCTTC TCCTATTTCTTCATGACAAGGCATGCCTTGAAGCACATGAAGGAAGGAAGCAGCATTATCAACACCACATCAGTGAATGC ATACAAGGGAAATGCAAAACTACTGGACTACACATCCACCAAGGGTGCAATTGTGGCATTTACAAGAGGTCTCTCCCTTC AGCTGGTGAGTAAGGGAATAAGGGTTAATGGTGTGGCGCCTGGACCTATCTGGACTCCATTAATACCAGCATCTTTCAAG GAGGAAGAAACTTCTCAATTTGGTGGGCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGTTGCTCCATCCTATGT GTTTCTTGCCTGCAACGCATGCTCTTCTTACATATCTGGACAAGTCCTACACCCTAATGGTGGAAACGTCGTGAATGCTT GA
Protein sequence (LotjaGi5g1v0220100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGEQKFPPQKQDAQPGKEHVMDPVPQFTNPDYKPSNKLQGKIAVITGGDSGIGRAVCNLFALEGATVAFTYVKGSEDK DARDTLEMIKKAKTAGAKDPLAIPADLGFDENCKKVVDEVVKAYGQIDILINNAAEQYECASVEEIDEKRLERVFRTNIF SYFFMTRHALKHMKEGSSIINTTSVNAYKGNAKLLDYTSTKGAIVAFTRGLSLQLVSKGIRVNGVAPGPIWTPLIPASFK EEETSQFGGQVPMKRAGQPIEVAPSYVFLACNACSSYISGQVLHPNGGNVVNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 1.1E-178 | – | |
| PANTHER | 1 | 293 | 293 | 1.1E-178 | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| Gene3D | 3 | 291 | 289 | 1.4E-78 | – | |
| CDD | 17 | 292 | 276 | 2.64813E-165 | – | |
| SUPERFAMILY | 41 | 289 | 249 | 1.74E-72 | ||
| PRINTS | 44 | 61 | 18 | 4.3E-36 | ||
| Pfam | 52 | 288 | 237 | 1.3E-52 | – | |
| PRINTS | 125 | 136 | 12 | 4.3E-36 | ||
| PRINTS | 125 | 136 | 12 | 1.7E-8 | ||
| PRINTS | 171 | 187 | 17 | 4.3E-36 | ||
| PRINTS | 177 | 185 | 9 | 1.7E-8 | ||
| ProSitePatterns | 184 | 212 | 29 | - | ||
| PRINTS | 197 | 216 | 20 | 4.3E-36 | ||
| PRINTS | 197 | 216 | 20 | 1.7E-8 | ||
| PRINTS | 218 | 235 | 18 | 4.3E-36 | ||
| PRINTS | 252 | 272 | 21 | 4.3E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi5g1v0220100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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