Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0226200 |
| Transcript ID | LotjaGi5g1v0226200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT1G09155.1 phloem protein 2-B15; Swiss-Prot: sp|O80494|P2B15_ARATH F-box protein PP2-B15; TrEMBL-Plants: tr|I3SET7|I3SET7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0226200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53283193..53287587) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGTTTTCTGGGGACTCAGGGGAGTCCACTGTGGAACACGTGGCGAGATACCAGATTGAGGCTGGAGACCTGACCATT AACGAAAATCTGAAAATGAAGTATTTTCCAAGTTCTTTGACCAATAACGCATTTACATGGTTCACAACCCTTGCTCCTAG GTCAGTCCACACTTGGACACAATTGGAGAGGATTTTCCATGAGCAGTTCTTTAGAGGGGTGTGCAAAGTGAGCCTAAAGG ACTTGGCTAGTGTCAAAAGGAAAAAGGAGTAAAAATCGGGGTCTTGGATCCGCCACTGAATTTCAGAACCGTGGTTTTGG AAAGTGATTCCACATTAGCGGTCGGGTGGGTTAATAATAGAGGTAGGAGGCCATGGAAGCTATACCAAATTCTAGGGAAG ATAGACCTGCTTATGCCGTTGGTAAATTGCCTAGGCGTCTATCATGTCATGAGGGAATGCAATGAGGTTGCTGATTTATT AGCAAAGAGTGGGAGAGATGGGAGGCTACTGCTATGACAAGAGTGTGATGAAGGAATTCCTAATATTGTTTGAAGAGGGC ACATGCCGACATGGACTTCTGCATCTGTTCTGAAGGGTCAGGTCTTGTTTTTAATCTCTGTCTACTGATCTAGTCTTCAT CTGATATCAGCATATTATTGTACTGCCTGTGATAAATTTAAGGGGGCTAGTGGAATAGTTGGGTTATTATTAAGGAGGGG TTACTACTGGATTTTAATTTGGACAGTGGGGTGGTTGTTTAGCGAGTTTCTTTTGTGATAAATAGGAGGTATATGTGTGT GATTGACTGGGTGGGGATGTTTTAATTGAGCTTGTGGTTCTGGTAGGTAAGGTTGACAAAATCGCGAGTCAACTCGTAGA ATCGCACGATTCTACGATGTTACAAGGCCCTTACGTGTTGAATCGGTAACAGAATCGCAATTTGGTATAATCGAGTGGAA TCGCCGTTGTTACCGGTAGAATCGTGGAATCACGAGCCGTGGCCGATTCTACTTTCTGGAAACCAAACCCGCTGACCCAT CAAACCGGATCCGACCCTGGGTTTTAAATGGAACCTTACAATTTTAGAAGTATCAACACACGTTTCTCTCCCACTCCTCC GCACTCCATCGTCACTCTTCCTTCGTGTGCCGACAGTGCCGTCGTCGTGCTCCTCCGTGCGGCGACGCTCTTCTCTATTC TGGTATGCTTCATCGTGCTCCCACGCTCTTCTCTCTTCATTGCACTTTCTTGTTCTTGCTTACCTCTAGTTGTGCGTATG ATTGGTTTTGTTCTCCATTGATGGATATTATGCTTTCTAGTTTCTAGTGTTTAGATTCTGTCCCTATAAATTTATAGCCA AATAATCAAAATGGGATGATGAACCAAACACCCTAGTTTCTGAAACGTGGCCCTTAGTGGGGTTTAGCTGCTACCTGGCA ATTGGCATGATGAACCAATATGATTCGTGTCAATTAGAGTAGCCAACTCAATATTGATTTCTCTTTTCTTTTATTATTTG TTAGTTTTTTTGTGAAATAAAGATGCTATTGAATTGACTCAGGCCAGGAATATAGATTGAGTCATATTTCAGCTTTGCTT TGTTTTTCTCGTGAGTAATAAATGAGGCTAAGAAATAAAAATGTTAAGGTATTTTGTATGCATATATATGAATTTATATG CGTATAATATATTTATACATATTTGTAGAATCGTAGCGTCCATGTTACGTTTATACGAGTTTACGATTCTGCACCCCTTT TCCGTCTTACGTAGAATTGCAATTCTGTCAACCTTGCTGGTAGGCGTAATAGTGTTCTTTTGGGGGAGAAGGCTTGTTCT TTTTGTTTTGTCTTAATTTGCACGTTGTTTAAAACACTTAAAACATGAGGTGAAGGATTGACGTGTGGATTGACTTGAGG CTTTGTTGCAAGCTGATGATACATTGAATGAAGCAGGGCTGTTGCTAGCTTTGTTTGGAAATGCATGTTGACAGATTGGA TAATGTATTGGTTATGTTGTGGTTGTAATTTTCCATACGGTTTTTGGGTTTATGGTGGGGTATTGCCTATGTACTTTGTT GGTTTTGACCATAATGACATATAATATAAGATAAACTTAAAAAGAAATTATTGGTAGACCGCGAACTAAATCTACACTTA TTTTATATCTATCTTTATATTTTTTTATCACTTCATATTATATATTACATTAATCATTTTTAATGTCTACCTTGAAATGT TGTACAATACCAAACATTATTCTTATCCATCGCAATAGTAGATGTTCTTTGAATTTATTCCACAACAAGTCGGCACACCT ATAAAGAACATGTCAAAGTCCAAAAATGACACCTATCAGATTCACCTATTTAAGCAGTCCAAAAACCTCCCTTGATCATA TTCTATTATTTTCTAAAGACCAAACTCCAAACCTCAAATGGCAACTAGATCCATCATAGAAACCTTGCCGGAGGAATGTG TTTCAGAAATTTTGTCTCACACATCTCCACCAGACGCATGTAGATTCTCCATGCTCTCCTCAACTCTGCGTTCAGCGGCA AACTCTGACATGCTCTGGCGTAGCTTCTTACCCTCTGATTACTCTGACATCATCTCAAGAGCCCTTAATCCTCTCTTCCT CAATTCATCATCTTCATTCAAGGACCTCTTCAAAGCTCTTTGCAATCCACTTCTCTTAGATGGTGGCACCATGGTAAATA TATATTGTGTTTGAATTAGCTTCTTTCCATCATTCATTTCATGCTTGATTTCCAAGAATAGAACATTTTCTCTTATTAAT TTGTTATTTATGCTATATATATGTTGTTCCTTGACACATGCAGATTTTCAAATTGGACAAGTCTTCAGGCAAAAAATCTT ATATTCTTTCTGCAAGAGAGCTATCGATAACATGGAGCAGTGATCCATTGTATTGGACCTGGAAACCAATGCGTGAATCA AGGTAAATTGACTTTCAAGATTCAACTGACCATGTTTGCTTAAGCATTTAACTATGTATGTGTGTATTTGGATTAAACTC AAACATCTATTTTATGTACTATTATTAAAACAAAATCATCAAGTTTTCTTATTTCAGAATCAATTTTGTCTCAAATTGAT TATGTGATAAGGATTTTCAGACTGAATAGTTAAATTGGTCCCTAAAATGTCAGCATGGAGAAATTTGTCTCCAAAACAAG GAAATGTCGTTGATTGTCAGTCAAGTTAGTCCGTACCAATCTTTTAACCGCAAGAATTGACTAAACTGTCGTGGACATTT CTGAAATCCTTAAACGAACATATTAGTTGTCAGCGTTCAACACTTTCAAGGACCAATTAGAACATTTATTAGGATTTCCA AGACTTAACAGAAATTTAATATTTTTGCAGATTCCAAGAGGTAGCTGAGCTAAGAACAGTGAGCTGGTTACAGATTCAAG GCAAAATCAGGACACAGATTCTAACACCAAACATGTTGTACTCTGTTTACCTCATCATGAATGTCTCACACCGTGGTTAC GGCCTTGATTCTGCGCCGTCTGAGGTATCATCGACGGTGGCGAACAACGTCATGCACACCAAGAAAGTGTATCTGTGGAA TAAAAATGAGAAGAACATGTGTGAGAAGTATACCCTGTTTCGCGGGTTCCATAGGGATGTTGCAAGAGAGACTTTGATCA TTCAAGATCAGATAAATCCAGGTCCATTGAAAAGAGATGATGGGTGGATGGAAATTGAGGTGGGTGAATTCTTCTGTGAT GGTGAAATTGATGAGGAGGTTAAGGTGAGTGTTATGGAGGTGGGTTATCAGTTGAAGGGAGGGCTTATAGTTGAAGGCAT TGAAGTAAGACCTAAGCAAGTTTGACTAAACAAGATCAAGGGTATAGGGAAAGCTAATCCTTGCTTGTACAGTGTGAGAA TTAATTACTTGATTTTAGCCATAGAAGCTGTCATGTAAAAGTGTAAATAGCTCTGAAATAATTGAGGGGAGATTTTTTTT TTCAAAATTATACTCCTACTAGCTTCTTTTTATATAAAGATTGGTTGACCAATCTTGTAAGATTCATGAACCAATCTTTT TAGTGTAAACGCCAAAATAAAACATACAAATTGAAAAAGAAAAATAATAAATGTTAAAAATTATATCTTCACATGAAAGA GTTTCATTTGTGCAAAAAAGAGTTATGGTTTTTTAATTGACCAATATCTTATTTCTTTTTTTTGGAGGGGAGGGTGGTTT TCAATTTTTATCCTTTGCTCTCTCCAGAGATTAATTCGTGCACTATTAGAAGATTTTTCTGTTTGATTACTTGACACTGT AGAGGACATGGATGTTTAAGCAAGGGTCCTATATATATGCTTTTTTAAGTCTTCGCAAATCGCAAAGAATCACGA
CDS sequence (LotjaGi5g1v0226200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTAGATCCATCATAGAAACCTTGCCGGAGGAATGTGTTTCAGAAATTTTGTCTCACACATCTCCACCAGACGC ATGTAGATTCTCCATGCTCTCCTCAACTCTGCGTTCAGCGGCAAACTCTGACATGCTCTGGCGTAGCTTCTTACCCTCTG ATTACTCTGACATCATCTCAAGAGCCCTTAATCCTCTCTTCCTCAATTCATCATCTTCATTCAAGGACCTCTTCAAAGCT CTTTGCAATCCACTTCTCTTAGATGGTGGCACCATGATTTTCAAATTGGACAAGTCTTCAGGCAAAAAATCTTATATTCT TTCTGCAAGAGAGCTATCGATAACATGGAGCAGTGATCCATTGTATTGGACCTGGAAACCAATGCGTGAATCAAGATTCC AAGAGGTAGCTGAGCTAAGAACAGTGAGCTGGTTACAGATTCAAGGCAAAATCAGGACACAGATTCTAACACCAAACATG TTGTACTCTGTTTACCTCATCATGAATGTCTCACACCGTGGTTACGGCCTTGATTCTGCGCCGTCTGAGGTATCATCGAC GGTGGCGAACAACGTCATGCACACCAAGAAAGTGTATCTGTGGAATAAAAATGAGAAGAACATGTGTGAGAAGTATACCC TGTTTCGCGGGTTCCATAGGGATGTTGCAAGAGAGACTTTGATCATTCAAGATCAGATAAATCCAGGTCCATTGAAAAGA GATGATGGGTGGATGGAAATTGAGGTGGGTGAATTCTTCTGTGATGGTGAAATTGATGAGGAGGTTAAGGTGAGTGTTAT GGAGGTGGGTTATCAGTTGAAGGGAGGGCTTATAGTTGAAGGCATTGAAGTAAGACCTAAGCAAGTTTGA
Protein sequence (LotjaGi5g1v0226200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATRSIIETLPEECVSEILSHTSPPDACRFSMLSSTLRSAANSDMLWRSFLPSDYSDIISRALNPLFLNSSSSFKDLFKA LCNPLLLDGGTMIFKLDKSSGKKSYILSARELSITWSSDPLYWTWKPMRESRFQEVAELRTVSWLQIQGKIRTQILTPNM LYSVYLIMNVSHRGYGLDSAPSEVSSTVANNVMHTKKVYLWNKNEKNMCEKYTLFRGFHRDVARETLIIQDQINPGPLKR DDGWMEIEVGEFFCDGEIDEEVKVSVMEVGYQLKGGLIVEGIEVRPKQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 117 | 117 | 3.7E-9 | – | |
| PANTHER | 4 | 287 | 284 | 3.0E-136 | – | |
| PANTHER | 4 | 287 | 284 | 3.0E-136 | – | |
| ProSiteProfiles | 4 | 50 | 47 | 10.743 | ||
| SUPERFAMILY | 4 | 83 | 80 | 3.92E-15 | ||
| Pfam | 8 | 50 | 43 | 4.7E-7 | ||
| SMART | 10 | 50 | 41 | 3.0E-5 | ||
| Pfam | 102 | 286 | 185 | 9.0E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0226200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…