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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001810
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1082 results. Now displaying 1 of 22 with 50 rows per page. This search has taken 5.919s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0009699.1
n.a. f-box family protein [Populus trichocarpa] gi|224082450|ref|XP_002306697.1| chr0 3994756 3999152 +
3 domain predictions
1 GO term
Lj0g3v0011449.1
n.a. F-box family protein [Theobroma cacao] gi|508720297|gb|EOY12194.1| chr0 4427000 4428133 +
3 domain predictions
1 GO term
Lj0g3v0020199.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr0 8093185 8094305 +
5 domain predictions
1 GO term
Lj0g3v0024489.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr0 9768409 9770188 +
5 domain predictions
1 GO term
Lj0g3v0033769.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X2 [Cicer arietinum] gi|502142316|ref|XP_004504897.1| chr0 10660454 10661161 +
4 domain predictions
1 GO term
Lj0g3v0040459.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Cicer arietinum] gi|502154994|ref|XP_004509922.1| chr0 13162733 13163545 -
3 domain predictions
1 GO term
Lj0g3v0047379.1
n.a. F-box/WD repeat-containing protein [Medicago truncatula] gi|357464045|ref|XP_003602304.1| chr0 15809576 15812040 -
4 domain predictions
1 GO term
Lj0g3v0047969.1
n.a. n.a. chr0 16090025 16097887 +
5 domain predictions
1 GO term
Lj0g3v0056799.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr0 18520016 18521993 +
5 domain predictions
1 GO term
Lj0g3v0056799.2
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr0 18520016 18524317 +
5 domain predictions
1 GO term
Lj0g3v0057049.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] gi|356511684|ref|XP_003524553.1| chr0 18619009 18622036 +
3 domain predictions
1 GO term
Lj0g3v0057289.1
n.a. PREDICTED: F-box protein At1g55000-like [Cicer arietinum] gi|502117167|ref|XP_004495726.1| chr0 18771454 18773249 +
3 domain predictions
1 GO term
Lj0g3v0057569.1
n.a. PREDICTED: F-box protein At1g67340-like [Glycine max] gi|356525160|ref|XP_003531195.1| chr0 18890823 18891709 -
2 domain predictions
1 GO term
Lj0g3v0058689.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357491171|ref|XP_003615873.1| chr0 19312936 19313961 +
5 domain predictions
1 GO term
Lj0g3v0059909.1
n.a. PREDICTED: F-box protein ORE9-like [Glycine max] gi|356545100|ref|XP_003540983.1| chr0 19885429 19888612 +
3 domain predictions
1 GO term
Lj0g3v0060579.1
n.a. PREDICTED: EID1-like F-box protein 2-like [Cucumis sativus] gi|449464252|ref|XP_004149843.1| chr0 20195427 20197888 +
2 domain predictions
1 GO term
Lj0g3v0061559.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr0 20628049 20629201 +
4 domain predictions
1 GO term
Lj0g3v0064859.1
n.a. PREDICTED: FBD-associated F-box protein At4g10400-like [Cicer arietinum] gi|502131855|ref|XP_004501125.1| chr0 22485612 22488620 -
2 domain predictions
1 GO term
Lj0g3v0065099.1
n.a. coronatine-insensitive 1 [Glycine max] gi|351724347|ref|NP_001238590.1| chr0 22631593 22634726 +
2 domain predictions
1 GO term
Lj0g3v0065509.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 22791557 22792793 -
5 domain predictions
1 GO term
Lj0g3v0065659.1
n.a. Cyclin-like F-box [Medicago truncatula] gi|124359880|gb|ABD32480.2| chr0 22888622 22889518 +
4 domain predictions
1 GO term
Lj0g3v0067819.2
n.a. PREDICTED: F-box protein SKIP5-like [Cicer arietinum] gi|502179825|ref|XP_004516505.1| chr0 24141646 24145029 -
3 domain predictions
1 GO term
Lj0g3v0067819.3
n.a. F-box protein SKIP5 [Medicago truncatula] gi|357456705|ref|XP_003598633.1| chr0 24143110 24145029 -
3 domain predictions
1 GO term
Lj0g3v0068009.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356571461|ref|XP_003553895.1| chr0 24252723 24255843 +
5 domain predictions
1 GO term
Lj0g3v0068019.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356560526|ref|XP_003548542.1| chr0 24257495 24258388 +
5 domain predictions
1 GO term
Lj0g3v0068879.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356558779|ref|XP_003547680.1| chr0 24714768 24715229 -
5 domain predictions
1 GO term
Lj0g3v0071509.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356525096|ref|XP_003531163.1| chr0 26244699 26247504 -
5 domain predictions
1 GO term
Lj0g3v0071519.2
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26249405 26252195 -
5 domain predictions
1 GO term
Lj0g3v0071529.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26249480 26252199 -
5 domain predictions
1 GO term
Lj0g3v0072849.1
n.a. PREDICTED: F-box protein At3g54460-like [Glycine max] gi|356541572|ref|XP_003539248.1| chr0 27153265 27160791 +
5 domain predictions
1 GO term
Lj0g3v0073339.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like isoform 1 [Glycine max] gi|356507724|ref|XP_003522614.1| chr0 27484178 27487669 -
4 domain predictions
1 GO term
Lj0g3v0076439.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357443383|ref|XP_003591969.1| chr0 29138599 29139749 +
5 domain predictions
1 GO term
Lj0g3v0076589.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357491185|ref|XP_003615880.1| chr0 29233164 29234464 +
4 domain predictions
1 GO term
Lj0g3v0076809.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X2 [Cicer arietinum] gi|502142316|ref|XP_004504897.1| chr0 29338619 29339125 -
4 domain predictions
1 GO term
Lj0g3v0076849.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 29375282 29380018 -
3 domain predictions
1 GO term
Lj0g3v0077469.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357486863|ref|XP_003613719.1| chr0 29734747 29734935 -
2 domain predictions
1 GO term
Lj0g3v0083029.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At3g14710-like [Cicer arietinum] gi|502087927|ref|XP_004488684.1| chr0 32730729 32732980 -
2 domain predictions
1 GO term
Lj0g3v0083029.2
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At3g14710-like [Cicer arietinum] gi|502087927|ref|XP_004488684.1| chr0 32730729 32732879 -
2 domain predictions
1 GO term
Lj0g3v0086179.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 34701463 34703243 +
4 domain predictions
1 GO term
Lj0g3v0086889.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357469105|ref|XP_003604837.1| chr0 35142447 35145064 +
2 domain predictions
1 GO term
Lj0g3v0087209.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 35378087 35379067 +
2 domain predictions
1 GO term
Lj0g3v0087609.1
n.a. PREDICTED: tubby-like F-box protein 6-like [Glycine max] gi|356555565|ref|XP_003546101.1| chr0 35649455 35654175 +
3 domain predictions
1 GO term
Lj0g3v0089099.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 36504377 36505985 +
5 domain predictions
1 GO term
Lj0g3v0091079.1
n.a. PREDICTED: F-box/LRR-repeat protein At5g63520-like [Cicer arietinum] gi|502133306|ref|XP_004501713.1| chr0 37654243 37656412 -
4 domain predictions
1 GO term
Lj0g3v0092059.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr0 38246350 38246946 +
5 domain predictions
1 GO term
Lj0g3v0092599.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At1g78750-like [Glycine max] gi|356515744|ref|XP_003526558.1| chr0 38616544 38617870 -
4 domain predictions
1 GO term
Lj0g3v0093209.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357458673|ref|XP_003599617.1| chr0 38948628 38950690 -
4 domain predictions
1 GO term
Lj0g3v0093219.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357458673|ref|XP_003599617.1| chr0 38948733 38951143 -
4 domain predictions
1 GO term
Lj0g3v0099979.1
n.a. coronatine-insensitive 1 [Glycine max] gi|351724347|ref|NP_001238590.1| chr0 42424490 42426877 +
2 domain predictions
1 GO term
Lj0g3v0103899.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 44369929 44371206 -
4 domain predictions
1 GO term