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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0314900 |
| Transcript ID | LotjaGi5g1v0314900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuole membrane-like protein; TAIR: AT4G14950.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q5XF36|KMS1_ARATH Vacuole membrane protein KMS1; TrEMBL-Plants: tr|I3SY33|I3SY33_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0314900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63313442..63320809) extracted from Lotus japonicus Gifu genome v1.2.
ATCATAATTAAAATTAAATTTGTTTGATTAACAAAGAAAATGACATTGAACCGTAAAAAAAACATGAGAATTGACAAACA CAAACACAAAGAATGATTGTAACTTTTGGTTGTGTCGTGGACGCGGAGGACATCGATCTCGATCATCATAGATTCTGACT CCAATCTTCAACGCTAACCTCCCAATTTCCTCTTCTTGATCTGCAAATTCCTCGAGGGAAAAGGAAAAACAATCCATACC CCTTTTTTGATCCACTCGTGTTGTAGCTGAATTCCGAAGATGCGAGGACCAACAACCCAGAAAGCATAGAGAGGATAAAA GGCGAAGATAGTGCTAACCCAAAACCAAAGATTCGATTTTAGAGCGTGAGAGATAATGGGGTCTGGAGAAACTGCAGCTT CTTCGTCTGGAACCACTAACATGTCTGGCTCAGGCATGTTATTTGATTTCAATTCATTGTTTTGTGATTCTGTTTGTTGT GTGTTCATCTAGATTTTGATTAGATTCGTTACTACGTTGAAAATTGTAATTTTTTTGACAAAAATTCCGGATCTTGTGGA ATTTTTTTGGTTTTGATCTTTTTCAAATTGAATGGTGTTTTTGGTGGAAGAGAGTTTTCCACTGGTTTTGAAAAGCATTA CTTTTTGTCGCGGTTTTTCGATAGATTGGATGGGCTACAATGTTATATTCCTTTGAGGGTTGCTGCTAGGGCAAGTATGT AGTCATGACTGGTTATTTTGGGGGGTTTTTTATTATGTGATAGATGATTATTTCAAAGCTTTCTTTGGGCTGAAATGGGG GAGTGGCAAGTTATGAAGAATCAATCGGTCATTAATCTGTTTCAGACTGCGAAAAACTGACCTTTTGGGTTCACATAGGT TATGGCGACTCGGTTCTTTCTTGTGTTCAAAATGGGGGGCTTTCATATGGCATCTAGGCATCCATATTAGCCAGTCTGCA CTACTTCACTATCTGTAGCATGAAAATCTAGGAGTTGAAATCGAGTTTTGGGGTGATAGAGGCCAATGACAGTTTTTAAC TAAGAATTTTGGGATGGCCATATTATGTTTTACTAATGTCTGACAAGAAGCATTTGCAATTTTTTAAGTGATTATATGAA TCTTTCAAATGGCTCCATGAAAACTATATGTAGATAGATCCACCACTGCTAGAGCCTCCATCATAAGCATCTCCTTTATT GATGAGTTCCGCAATTAGGGTTATGAAAATTGTTAATCTGTTTTATCATATTGTTGAGGTTTGGGTGAGTGGGGAAGAGG GACTTGTCATGATAGGGATCTTATGGTGTTTAGGTTGCATGATTTTGGGAGAAAAGGTGATGGCCTTAAAGCTTAGGTTA TATTTTCATCCTCTTTCTGCTTAAATAATTGGTAATTGCAAAATTTAGCTTGCAAGTGTGTACATAGTTAATGGGTTTGA CACATTTTGTTCTTGTAGTTAAATTTGTTGCTTGGGTAAATCATGGAGTTTATATTTTCTCGGTTGGGCTTTTAGGGGGT CTAGTTGAAAGAGACACAAGGGATTATATTGAGTTCCATAGTGGTTGCAGTCTTGGTGAATCAAAAGATTTGAGGAATCT AATAAGCAAGAGGACTCAGAAGAGGAAAAGGAAAAATCGTCAAGCTATAAGTCCAGTGATATATAGGTAGCAACTATAGG AATACAAATATTAATTTTATAAGATAAAGCCTTAAAAGAGATTTGGGAGGGATTCAGAGAGTAGCAAAGTGTTTCTTGCA AATAAAGAGAGTTCCTAGAAGTAAAGAATCATGGTAATGGGGAGAGAGTGTTCAAGAGAAGGCTCAAATTAAAAGAGTGT TTTAAAGCCTGTCTCCTTTGAAAATTGGCAAAAGAGACATTTGCACTCTGTTAAACTAATCCTTTGAAAAAATTACTTAA AACTAGTGTTTAGATTCTATTTTCTATGTTTCATTGTATCTCATATACTGATTAGAAATTCTGTGTATTGCAGGGCTTCA CAAGAAGCACCAATTGGAGCTAGAAAATTTGACACTAACCACACAACCCTTCAAAACACTAAAATTCTTCACATTTTCCG TTATTCAATACTTGAAGAAAACTGCATTTTATCTGTTGGGAAAAGGTGGATGGCTTCTGCTTTTAAGTTTTGTGGTAGGG GCTCTTGGCATAATGCTGATCACCTTTGATGGTCCTCATGAAAAGGTATTCTCATTTATTCTATCAATAACTTATGTATG AGTGTGTATGACAGTCCTAAATCATACAGAATTTCATGGATAATCATTTATTTCTGGGGTCTTTTTGGCTGTTGTACTAA CAAGTAATAACCCTTGTTGTCAAATTTGAATCTAGATATTAAAGCCTCAAATCTGCAATACAAGGTCAAAACCTGAAACC AGTTTTAGTTTCATTCTGATGTTATTTTTTGAACTTTGAAGATGATTCTAGCTAAAATGAATGTTCATAATTTCGTTACA TGTGGTGCTAAATGTAAGATGAATTTTTTTTTGCCGCTTCAATGTTGCAAACAATTAATATACCCAGTCCTCCCTAGAAT AAAAAACCTATGGCCATTCTTCACTTCTTACTACTCTCATATGTTAAATTTCAGGCAGTTTTTTGTTCACTTTTATTAGA TGCTCATGCTCCTATGACACTGATATGCACGTTGTTTTTGCAGCATCTTGAGGAGCTGCTTAAATATTTCCGCTTTGGAC TTTGGTGGGTCGTCCTTGGAATTGCATCTTCAATTGGTCTTGGTGAGTAAAACGTAGGCATGCATGGATATGACTTATTT TACCCAGATGAGGTTCTTGATTATGTTATACAGTTAGTTACTAGTTAGTAAAACAGTTGGTCTTTAGGCAGCTTGGGTGA TTTGGAGTTACAGAAAAACATTTTCTTGCAACACATAGGTTTGATAGTTGATACTTGTAAGCAATAATCATCTATTTGGT ACCCCAATATCTTGATTATATATGCCTTGTAGCCTTGAGTTCTCATTTTGTGCTCTTATCTTGTTAGCTTTTTCGTTTTT TTATTTTCTTTTTGGTAAAATTTTCCCTTTCCGTTTTCTTCAATTCAGGATCTGGTTTGCATACTTTTGTTCTATACTTG GGTCCCCACATAGCATTCTTTACATTGAAAGCCATGCAATGTGGGCGAGTTGATTTGAAAAGTGCTCCATATGATACAAT ACAGTTAGATAGAGGTCCTTCTTGGCTTGATAAAGACTGCTCCCAATTTGGGCCACCGTTGTTAGAATATAGTTCACACA TTCCACTCAGCAGTATTTTGAGTCAAGTTGTGCTGGAGGCTGTTCTATGGGGTATGGGAACAGCTATTGGAGAGCTTCCT CCTTACTTTATCTCCAGGGCAGGTATAATGTTTATATCATATGTCTTGTATTTCTCTTAATTTAAATAAGTCATTGTTAA ATCGGTATAAAAGTCTGACTATTAAGATATGCTTACCATACAAATGGTCTATTTACAAGTAACTTTGTCTTTATACTTAT TTCATTACCAGGATGGTGTGAAGCTCTGGATCTTCAGTTATTTCGTTCAATGCTTCTTAGATGGAAAAGAAAAGAAAAAA GAATAAGCCATTTAGTTTTTAAAGAAATAAATTATGCCAAGACTATAATAGATTAGCCACTATTGAAAATTCTCCAAATT AAAGCTCAACCTCAGCTTCGGAACCGTACTAGTTCACATTATCTACCTAATCCAAGTATATACTTATGGTAAACTGAAAA AATCATCTTAGTGTCTGAAGCCAGGGTATTTTAGTTCTTTTATGTTGTCCGAAAATAATGGATAATGTTGTATATTATTA ATTACTTTTAAAATGAATGAAATAACCAAACCAGAGACTTTGTTTACAAATAATGGAATTGTTAGAAATTTTGACTCTAT TAGAAAATGAATAATTAAATTGTGTAAAACGTGTATAACTAATGGATGGAACACTAAAATGAATTGCATCCTAATATGCG CCTGCACCTTCTTTGGCAAACAAAATGTTTGGCGTAAGCTGTATCATAGTCAAACTTCATGTATCTATTTGTAGTTTTCA CCACTTCCGTTTTGATTCAGTACTTTTTGATCTCTATCTTTCTATTTCTTCTGAAACTTTCTGAGTTCTATCTCGTCTGA TTTAACATGATGATTAACTTACTTATTTTTCAGTAATTTGGTGCTTTATTAGTTAGTTACTCTATGAGTTGGTTTGTACA TGATTCTATTCAAATCATTTGTGTAGCACGCTTGTCTGGTAGCAAATTGGATTCAATTGAAGAATTGGATACTGAAAACA ATGGAATCATGGCAACCTACGTTAACAAGATCAAGCGTTGGTTTCTATCTCACACTCAGCATTTGAATTTTTTAACCATT ATGGCGCTTGCTTCGGTTAGTGTTAACTTTCTTCTTTAGTAGTATGATATTTTTCTTCATTAAATAGACCGAACAGTATC TTTTGTGAATAAATTCCCTAGGTATTGCTTCGTTGTATTTTATATAGTAAGTCTTTCCCTTATAGCAAACATATCAGAGT TGGGTTGTTAGTCAGGTAATGGAGATTCTGCAAACAGTGTCTGTCATTTCCCTTTCTCTGTGTTGATATTGAGCTTTCCT TCAGGGGAATAAGCTTGAGGGAGTAACTTATGCTGATTAGTGAAAATCTTTACTCAGTTAGTACTATTTAATGGTTTCTC TATTTTTGTCCTGCAAATTATAGTTGTTTATTCTATATCTTATACTGCTTATATTTGATTCTTCATAATCCACTACTTTA AAAGTATTTAAATGAGTCATATCCAAATCCTTATTCATCAGGGTGCTTGAGTCCTTTTTTTTATGCCTCTGTACCTATTC TCATATAAAATCGAGTTTAATAGAATGAGTTGACGATTCCTTTGGTCAAGGTGCATCCTACAAAATAGCATTTTCAATTA ACTAAACAACATCTGTTGTATAAACATTCGAACTGTCCATTAACTTAGTTTATATTTCAGGTTCCAAATCCTCTATTTGA CCTTGCCGGTATCATGTGTGGACAATTTGGCATTCCATTTTGGAAGTTCTTTCTTGCCACTTTCATCGGAAAGGCAATTA TTAAAACTCACATACAGGTTTGTATAAGTTTAGACTCATCTTCTATCCTTACCAACTAATTTCGCTTTTTATGCCATGCC TTTGCTTTGCTTTTCAATGGCTCCAAATTAAGACTCAGCTTGTTAACATTTTATTATTTATTAAATGGTACTAAAAGGTT TAAGTATATCTAGGCTTACACTGTTACACTGGGTGTGAACAGATCATAACTCATATATAGATATGTTAGGAACTAGAAAA TAGCACAATGACTAAGAGTGAAAATAGGATAGATGAACACTGAATCCTCTGGAAAATACCCAGAAGCAGTGTTTTAGGGA ATTACAAATAACAGTAGAAAATTAAAGATAAGAAACTGAGGCAATTCGAGAGTGCCTCTACTCTCCCAAGCCTAATCCCA AATCAAGCCTACCTTCTCTCTCACACAATACATGCTTATATAATCCCCAATCTCTCTCTCTCTCTCTACCTGCACAGCTC ATGCCACCTCAGCAAGCGGTTACTCCTCTCAAGGGAAAAGATTTGGTGCATTGCACCTCTTCCTCTTACTTTCATGGACT CTAGTAGTATTGGGCCTATTCCTAATAATTGGGTTCCTATCAAGATATATTGTGCACAGAGCTTGTAGTCTATAAACTAT AATATAATGCTTTTGATTCACCCTCTATGCTATATTTGTTGTGCAGACGGTATTTATCATCTCAGTTTGCAATAATCAGC TCCTTAACTGGATAGAGAATGAATTTATCTGGGTTCTCGGCCATATACCTGGTTTTGAATCTATCTTGCCGTCTTTGATT GCTAAGCTCCATGCTGCTAAAGATAAGTATCTCAAAGCATCCCATCCAGTTTCCCCAAATATCCAGGTAACTGTTGGCTG CAAGTTAACGTGTTTATCAATGTTTCTCATCATCAATAATATCCCTCATAATCTGGTTTTTGCCGAGCTCAATGGCGTAG TGTGATCCACTTCACTTTGTGGGATAAGACTTTTATTGTTGTTTGTTTAAGTGCTCATATTGAATGACAGCCTCAAGAGT CTTATTCTAATTTTTGATTACTTTTTCCTAAAAAAAATTGATCTATAATTTTCAGGGGAAAAAATGGGATTTCTCAATTG CTTCAGTGTGGAACACTGTGGTGTGGCTTATGCTTATGAACTTCTTTGTCAAGATAGTGAATTCAACTGCTCAGAGTTAT GTGAAGAAACAGCAGGAGAAAGAGCTAGCTGCATCAACAGAATAGAATGTTCATGTTCTGCTTGCACATTGCTTTGTTTT TTTTAAGCTACTCTTGCAAGCAGAAATGTTGAACTTACTGCTCTTCCTGTGAAAGTGAAATTTACTCATTGAATTAGAGT TAGAGGTCTTGTTAGGAGCGCTTCTATAGGCATCAATATACGAACACAATAGGTAACATAAGCTGTGACTTTCATTTTAG GCAACAATTATTTGGGATGGCTCATAGATTTTTAACCACACTATTGCTGTTTACCATGGAATTACTCTAATCCTACTATT CTTTTGGAATTGCAAAACTATTTGCTTTTTTTTATGAGTATTTGACAGTAGACTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTAAACACTAACATTAGGCCTTAGAGTGTGTTTGTTTTAT TGTTTCCTGTTTTCCAATGCACGATCAACATGAAAACAAGCTTCTTGTCCCACTAGGAAGAGTCCATTTTAGCCATCTTA TGTTTTAAAGAGTTATGATTCATTCAAATTATCTATCACATCTTTACTTTCTCTTTCTTGATTCCTATTTTTTTTTTCTG AACTTCATTTCGACTTATGTGGAAAGTGTGAATGAACCTTGATTCTGTTTCAAACGTTAGTTTCCAGTTGAGATATGAGC TTGTTTGTTTTTACGTTTCAACCACTTTCAATGCCAGTTTGGGGAATTCCAAGGCATTTTAACCAATGGGTCCAAGTTGA AGGATTGGACCGAAAACACGTTCACATTCAAGTCCATATAAAAACAAACACACACATAGTGGACCTAAATGATGTGCTGA AGAGATTTTAACTCATGATTCTTGGCATTATTAGCATATAGTGAATAAGCGGAAATTATAATGGAAATGGTGTGGCAGAT GAGTTAAATTGAAAAGTGGAAACTTGCAAACAAAGCAAGACCATGTGCCGAAACATACAATTTGTGCTGAAAAGCAAGTA GAGAAAGG
CDS sequence (LotjaGi5g1v0314900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGATCACCTTTGATGGTCCTCATGAAAAGCATCTTGAGGAGCTGCTTAAATATTTCCGCTTTGGACTTTGGTGGGT CGTCCTTGGAATTGCATCTTCAATTGGTCTTGGATCTGGTTTGCATACTTTTGTTCTATACTTGGGTCCCCACATAGCAT TCTTTACATTGAAAGCCATGCAATGTGGGCGAGTTGATTTGAAAAGTGCTCCATATGATACAATACAGTTAGATAGAGGT CCTTCTTGGCTTGATAAAGACTGCTCCCAATTTGGGCCACCGTTGTTAGAATATAGTTCACACATTCCACTCAGCAGTAT TTTGAGTCAAGTTGTGCTGGAGGCTGTTCTATGGGGTATGGGAACAGCTATTGGAGAGCTTCCTCCTTACTTTATCTCCA GGGCAGCACGCTTGTCTGGTAGCAAATTGGATTCAATTGAAGAATTGGATACTGAAAACAATGGAATCATGGCAACCTAC GTTAACAAGATCAAGCGTTGGTTTCTATCTCACACTCAGCATTTGAATTTTTTAACCATTATGGCGCTTGCTTCGGTTCC AAATCCTCTATTTGACCTTGCCGGTATCATGTGTGGACAATTTGGCATTCCATTTTGGAAGTTCTTTCTTGCCACTTTCA TCGGAAAGGCAATTATTAAAACTCACATACAGACGGTATTTATCATCTCAGTTTGCAATAATCAGCTCCTTAACTGGATA GAGAATGAATTTATCTGGGTTCTCGGCCATATACCTGGTTTTGAATCTATCTTGCCGTCTTTGATTGCTAAGCTCCATGC TGCTAAAGATAAGTATCTCAAAGCATCCCATCCAGTTTCCCCAAATATCCAGGGGAAAAAATGGGATTTCTCAATTGCTT CAGTGTGGAACACTGTGGTGTGGCTTATGCTTATGAACTTCTTTGTCAAGATAGTGAATTCAACTGCTCAGAGTTATGTG AAGAAACAGCAGGAGAAAGAGCTAGCTGCATCAACAGAATAG
Protein sequence (LotjaGi5g1v0314900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLITFDGPHEKHLEELLKYFRFGLWWVVLGIASSIGLGSGLHTFVLYLGPHIAFFTLKAMQCGRVDLKSAPYDTIQLDRG PSWLDKDCSQFGPPLLEYSSHIPLSSILSQVVLEAVLWGMGTAIGELPPYFISRAARLSGSKLDSIEELDTENNGIMATY VNKIKRWFLSHTQHLNFLTIMALASVPNPLFDLAGIMCGQFGIPFWKFFLATFIGKAIIKTHIQTVFIISVCNNQLLNWI ENEFIWVLGHIPGFESILPSLIAKLHAAKDKYLKASHPVSPNIQGKKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYV KKQQEKELAASTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 330 | 330 | 6.4E-168 | – | |
| PANTHER | 1 | 330 | 330 | 6.4E-168 | – | |
| Phobius | 24 | 48 | 25 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 49 | 289 | 241 | - | – | |
| Pfam | 117 | 218 | 102 | 6.8E-9 | ||
| TMHMM | 174 | 196 | 23 | - | – | |
| TMHMM | 209 | 231 | 23 | - | – | |
| TMHMM | 244 | 263 | 20 | - | – | |
| Phobius | 290 | 309 | 20 | - | – | |
| TMHMM | 290 | 312 | 23 | - | – | |
| Phobius | 310 | 333 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0314900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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