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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0317700 |
| Transcript ID | LotjaGi5g1v0317700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xyloglucan endotransglucosylase/hydrolase; TAIR: AT1G11545.1 xyloglucan endotransglucosylase/hydrolase 8; Swiss-Prot: sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8; TrEMBL-Plants: tr|I3SJZ6|I3SJZ6_LOTJA Xyloglucan endotransglucosylase/hydrolase; Found in the gene: LotjaGi5g1v0317700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63546823..63547146) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCCTGTTTTCCAGCATATGGAATGCAGATGACTGGGCCACAAGAGGTGGACTTGAGAAGACAAACTGGAAACTAGC ACCATTTGTGTCATCCTACAAGGACTTCAGTGTGGATGCTTGTCAATGGGAAGATCCATTCCCTGCATGTGTCTCAACCA CAACCAAATATTGGTGGGATCAATATAATGCTTGGCACCTCTCAGATGATCAGAAAACTGATTATGCTTGGGTTCAGAGG AACCTTGTCATCTATGACTATTGCAAGGATACTGAACGTTTTACAACCATGCCTGAGGAGTGTTCATTGAGTCCATGGGC ATAA
CDS sequence (LotjaGi5g1v0317700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTGTTTTCCAGCATATGGAATGCAGATGACTGGGCCACAAGAGGTGGACTTGAGAAGACAAACTGGAAACTAGC ACCATTTGTGTCATCCTACAAGGACTTCAGTGTGGATGCTTGTCAATGGGAAGATCCATTCCCTGCATGTGTCTCAACCA CAACCAAATATTGGTGGGATCAATATAATGCTTGGCACCTCTCAGATGATCAGAAAACTGATTATGCTTGGGTTCAGAGG AACCTTGTCATCTATGACTATTGCAAGGATACTGAACGTTTTACAACCATGCCTGAGGAGTGTTCATTGAGTCCATGGGC ATAA
Protein sequence (LotjaGi5g1v0317700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFSSIWNADDWATRGGLEKTNWKLAPFVSSYKDFSVDACQWEDPFPACVSTTTKYWWDQYNAWHLSDDQKTDYAWVQR NLVIYDYCKDTERFTTMPEECSLSPWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 105 | 105 | 1.2E-30 | – | |
| PANTHER | 1 | 104 | 104 | 3.9E-57 | – | |
| PANTHER | 1 | 104 | 104 | 3.9E-57 | – | |
| SUPERFAMILY | 1 | 105 | 105 | 3.84E-21 | ||
| Pfam | 54 | 101 | 48 | 5.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cell wall | The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. | ||
| Biological process | Cellular glucan metabolic process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. | ||
| Molecular function | Xyloglucan:xyloglucosyl transferase activity | Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
Expression pattern of LotjaGi5g1v0317700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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