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LotjaGi5g1v0358200.6

Overview

Field Value
Gene ID LotjaGi5g1v0358200
Transcript ID LotjaGi5g1v0358200.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3; TrEMBL-Plants: tr|A0A1J7HJ17|A0A1J7HJ17_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:67289513..67290293) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTTACTGCTTCATACCACATAGATTTCGACACCATGGCTGGTGCAGACAAGTTTGGAAATATCTATTTTGTGCGGT TGCCGCAGGATGTTTCTGATGAGATAGAAGAAGATCCTACTGGTGGGAGGATCAAGTGGGAGCAGGGAAAGCTGAATGGA GCTCCCAATAAGATGGAAGAAATTGTACAATTTAATGTTGGTGATGTGGTCACAAGCTTGCAAAAGGCATCTCTTATACC TGGTGGTGGAGAGTGTATTGTATATGGAACAATTATGGGAAGTATTGGGGCATTGCATGCTTTTACTTCACGTGATGATG TTGATTTCTTTTCTCATTTGGAGATGCATCTGAGGCAGGACTATCCACCTTTGTGTGGAAGAGATCACATGGCTTATAGA TCTGCCTATTTTCCCGTTAAGGTACGCCTAATCAATATGCTGTTTATTCCTTCTAGTTTAGTTGTTGCAAAGCATTATTT GTCCTCCATAAGCATCCTTCCTGTTATATTGTGTCTGTCGCAGGCAAGGGTTTTACTCTTCTGCCTTCGACAAAATTGCA GATAGATCCAAAATGTTTTATTTGTTCATTGATTTTCTAGCCATAGCATTAAATTTTAACAAATTTCTGAGGCCTGTTTG TAGGATGTGATTGATGGTGATCTATGCGAGCAATTCCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCTGATGAATT AGACAGAACTCCGGCAGAGATACTGAGAAAACTAGAGGAAGTGCGAAATAAGATTATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0358200.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGGTGCAGACAAGTTTGGAAATATCTATTTTGTGCGGTTGCCGCAGGATGTTTCTGATGAGATAGAAGAAGATCC TACTGGTGGGAGGATCAAGTGGGAGCAGGGAAAGCTGAATGGAGCTCCCAATAAGATGGAAGAAATTGTACAATTTAATG TTGGTGATGTGGTCACAAGCTTGCAAAAGGCATCTCTTATACCTGGTGGTGGAGAGTGTATTGTATATGGAACAATTATG GGAAGTATTGGGGCATTGCATGCTTTTACTTCACGTGATGATGTTGATTTCTTTTCTCATTTGGAGATGCATCTGAGGCA GGACTATCCACCTTTGTGTGGAAGAGATCACATGGCTTATAGATCTGCCTATTTTCCCGTTAAGGATGTGATTGATGGTG ATCTATGCGAGCAATTCCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCTGATGAATTAGACAGAACTCCGGCAGAG ATACTGAGAAAACTAGAGGAAGTGCGAAATAAGATTATTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0358200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGAPNKMEEIVQFNVGDVVTSLQKASLIPGGGECIVYGTIM GSIGALHAFTSRDDVDFFSHLEMHLRQDYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAE ILRKLEEVRNKII
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10644:SF1
1 165 165 2.0E-70 –
PANTHER
PTHR10644
1 165 165 2.0E-70 –
Gene3D
G3DSA:2.130.10.10
1 87 87 4.7E-15
IPR015943
Pfam
PF03178
2 139 138 1.3E-38
IPR004871

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0358200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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