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PF03178

Source: Pfam

Description

CPSF A subunit region

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Associated Lotus transcripts 30

Transcript Name Description Predicted domains Domain count
Lj0g3v0282539.1
– PREDICTED: DNA damage-binding protein 1-like isoform 2 [Glycine max] gi|356525403|ref|XP_003531314.1|
Domains
7
Lj1g3v4763880.1
– Pre-mRNA-splicing factor rse1 [Medicago truncatula] gi|358348136|ref|XP_003638105.1|
Domains
6
Lj1g3v4763880.2
– Pre-mRNA-splicing factor rse1 [Medicago truncatula] gi|358348136|ref|XP_003638105.1|
Domains
5
Lj2g3v0486970.2
– PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max] gi|356559917|ref|XP_003548242.1|
Domains
7
Lj4g3v0073570.1
– PREDICTED: DNA damage-binding protein 1a-like isoform 2 [Glycine max] gi|356512638|ref|XP_003525025.1|
Domains
4
Lj4g3v0073600.1
– PREDICTED: DNA damage-binding protein 1a-like isoform 2 [Glycine max] gi|356512638|ref|XP_003525025.1|
Domains
4
Lj4g3v0073610.1
–
Domains
4
Lj5g3v2288600.1
– PREDICTED: splicing factor 3B subunit 3-like [Glycine max] gi|356576847|ref|XP_003556541.1|
Domains
11
LotjaGi1g1v0743000.1
– Splicing factor family protein; TAIR: AT3G11960.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1; TrEMBL-Plants: tr|V7D0H9|V7D0H9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0743000
Domains
8
LotjaGi2g1v0160000.1
– Cleavage and polyadenylation specificity factor subunit 1; TAIR: AT5G51660.1 cleavage and polyadenylation specificity factor 160; Swiss-Prot: sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1; TrEMBL-Plants: tr|I1MQ84|I1MQ84_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0160000
Domains
9
LotjaGi2g1v0160000.2
– Cleavage and polyadenylation specificity factor subunit 1; TAIR: AT5G51660.1 cleavage and polyadenylation specificity factor 160; Swiss-Prot: sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1; TrEMBL-Plants: tr|A0A0R0G307|A0A0R0G307_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0160000
Domains
9
LotjaGi2g1v0160000.3
– Cleavage and polyadenylation specificity factor subunit 1; TAIR: AT5G51660.1 cleavage and polyadenylation specificity factor 160; Swiss-Prot: sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1; TrEMBL-Plants: tr|A0A0R0FSW8|A0A0R0FSW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0160000
Domains
9
LotjaGi2g1v0160000.4
– Cleavage and polyadenylation specificity factor subunit 1; TAIR: AT5G51660.1 cleavage and polyadenylation specificity factor 160; Swiss-Prot: sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1; TrEMBL-Plants: tr|I1MQ84|I1MQ84_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0160000
Domains
9
LotjaGi4g1v0390500.1
– DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500
Domains
11
LotjaGi4g1v0390500.2
– DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|A0A0S3QYR5|A0A0S3QYR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500
Domains
11
LotjaGi4g1v0390500.3
– DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500
Domains
11
LotjaGi4g1v0390500.4
– DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|A0A0S3QYR5|A0A0S3QYR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500
Domains
11
LotjaGi4g1v0390500.5
– DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500
Domains
13
LotjaGi4g1v0390500.6
– DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q6L4S0|DDB1_ORYSJ DNA damage-binding protein 1; TrEMBL-Plants: tr|A0A0S3QYR5|A0A0S3QYR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500
Domains
11
LotjaGi5g1v0358200.1
– Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3; TrEMBL-Plants: tr|V7BAV6|V7BAV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200
Domains
11
LotjaGi5g1v0358200.2
– Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3; TrEMBL-Plants: tr|A0A078HD66|A0A078HD66_BRANA BnaA01g30930D protein; Found in the gene: LotjaGi5g1v0358200
Domains
10
LotjaGi5g1v0358200.3
– Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3; TrEMBL-Plants: tr|V7BAV6|V7BAV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200
Domains
10
LotjaGi5g1v0358200.4
– Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3; TrEMBL-Plants: tr|V7BAV6|V7BAV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200
Domains
11
LotjaGi5g1v0358200.5
– Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1; TrEMBL-Plants: tr|V7BAV6|V7BAV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200
Domains
7
LotjaGi5g1v0358200.6
– Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3; TrEMBL-Plants: tr|A0A1J7HJ17|A0A1J7HJ17_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200
Domains
6
LotjaGi6g1v0278400.1
– DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278400
Domains
11
LotjaGi6g1v0278400.2
– DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|A0A0S3QYR5|A0A0S3QYR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278400
Domains
11
LotjaGi6g1v0278400.3
– DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278400
Domains
11
LotjaGi6g1v0278400.4
– DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|A0A0S3QYR5|A0A0S3QYR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278400
Domains
11
LotjaGi6g1v0278400.5
– DNA damage-binding protein 1; TAIR: AT4G05420.1 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278400
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF50978 SUPERFAMILY 1 3.33