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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0365900 |
Transcript ID | LotjaGi5g1v0365900.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | WRKY transcription factor-like protein; TAIR: AT5G14090.2 regulator of nonsense transcript protein; Swiss-Prot: sp|Q5XV40|LAZY1_ARATH Protein LAZY 1; TrEMBL-Plants: tr|A0A0R0FEA6|A0A0R0FEA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0365900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:68059289..68061383) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAGAGACATGAGTAGCTTTAATTTGTGGAAGATGATCGATCTTATGAAATAGAGTTCCTTCGCTTATTTTATCCTCA GAATTCACGCAATCAAAGCTCAAAAGATGAAGGTAAGATCCATTTTCAAGCATGCCTTGCAGAACCAAATTCGACTGTCT ACATGCTCTTCTGAGTTGGTTAATATATGCAATCTCTGATCACTTTGCTGCAGTTACTTGGATGGATGCACAGAAAATTT CGCCAGAATAGCACTGAACCGTTTAAAGATCACTTGGTTATTGGTAAGTTATATATATGCTGCTGGCATAATACATTTTT TATGGGCCACCAAAAGTACATAATTAATTTAACTAACTGCATGTCTAACTAAATATTACATGACTTGATCATTGATGTAT GTCACTACGTACCTTGAAATTATCAAGTTCACGAGAACTCTGAAATCAATTTAATTTAATGTGTGTATCACCATAAATAA ATATTGGTATAGCCTATTAATAGTAAACTACCCAAGGTAGGACAATAATCTTGTAATTATCTTTCAGGGAAGGCAGGACA TGAAATTGATGAACGCAGTTACCATCTGAAACCGAACTTTGGGAGCAAACATGTCCAACAAATTGAGAAAGAGCACAGCC TTAGAAAATCTTTCAGTGGTCAGGAAGCTGCAGATGCAAGAGTAGAAGATGATGAGTACGTGTATGAGGAAGATGGTGCT ATGTATGAGCTTTTCCATGGGTTCCTCGCAATTGGAACTCTTGGGCTTGGGTGCAGTACTGATCCATCAGCAACACCAAC ATTTGGCAATATCTGTGTTGAGAATATAATTACTGAAAAGGAAGATGAAGTGACTGAGAATGAATTGAAGCTGATCAATG ATGAGCTCGAGAAAGTTCTTGGAGATGATGAGTGTATTAATTCTGCCAGAAATAGCCATGTAAGTAGCAGTACTGCAGGG AGAAGTAGTCATGGAAGCATGATATCATTGAGCGGAAAGCCAATGAATATGATGGAAGGTAATTCTGGTAATATTGGAAC TTCTTCAATTTGTCCACTTCAGGGTTATCTTTTTGGATCAGCTTCCATTGAATTACCAAAAGTAGTACCAGCAAAGAGTA GGACATCACTTGGGGAGCTATTTCAGAGAAGCAAACTAGCAGACCAGGAGATTAATGAAAAGGGTGATAAAATCAGTGAA AAAGAAGATAAATCTGCCCTGCATCTGGTAAGAAAGAAGCTAAAAAAAAAAATATTGCTCCATACTTGTTCCCGAAACTC CTCCTCAAATAACGGTGGACCTGTTGATTCAGCTAATTCAGCAGACACAAAATTGCGTAAGGTACGTACATACACTTGTA AATTCCATAATAATGTGATATTCGATCGTTATGGTTCTTCTAGTCATTGAATAATTTGTGGTCGGGTTGTAGATTCTCCA TATGTTCCACAGGAAAGTTCACCCTGAAAATTCAGCAGCTGAACCAAAGAATGAGTGTAAAAAGAAAACAATCAATGTGG ACGGAGGCCATAACAAATTTGAAGCATTAGTTCCAAAGGAAAGCAACAAGAGCCAATCAAATCCAGTACTCCAGTTTAGC CTTGGCATTGAAGATTCATCAGAGAATAGGGAGCACTGGATCAAAACTGATTCGGATTGTAAGCAAGCACAACATTACTC TCGATACAGAACAGTACTCCAAATGGATTTCCATGAATATGCATGATAACAATTAAGGCCAATAGTTCCTTTTAATTTGA GTAATATGTGTGATACATGCCTATAAATACTGTACCTGGCTCAGATTTTGCTTTTTATAATTGCAGACTTGGTCTTGGAG CTCTAGCTAGGAGGCCGCAAAGGAAGAAATTGAGCTGTTTTTAAGCTATATCGTCCTCAGAAATTAATAATGTGTTAATT TGTAAGATTTTCTCTAATTTGCGATCGAGGAGCAAGTATTAAACATATTATATATCATTTGTATGTCAATTATATATGTA TGTATGGTTTCAATCTGAAGCATCATTTTGCATGTGCAAGTACAACAGGAGAAACCATGTAGTGCGTGAATTTCAAAATT GAAACATCTTGTGTT
CDS sequence (LotjaGi5g1v0365900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCTCTGATCACTTTGCTGCAGTTACTTGGATGGATGCACAGAAAATTTCGCCAGAATAGCACTGAACCGTTTAA AGATCACTTGGTTATTGGGAAGGCAGGACATGAAATTGATGAACGCAGTTACCATCTGAAACCGAACTTTGGGAGCAAAC ATGTCCAACAAATTGAGAAAGAGCACAGCCTTAGAAAATCTTTCAGTGGTCAGGAAGCTGCAGATGCAAGAGTAGAAGAT GATGAGTACGTGTATGAGGAAGATGGTGCTATGTATGAGCTTTTCCATGGGTTCCTCGCAATTGGAACTCTTGGGCTTGG GTGCAGTACTGATCCATCAGCAACACCAACATTTGGCAATATCTGTGTTGAGAATATAATTACTGAAAAGGAAGATGAAG TGACTGAGAATGAATTGAAGCTGATCAATGATGAGCTCGAGAAAGTTCTTGGAGATGATGAGTGTATTAATTCTGCCAGA AATAGCCATGTAAGTAGCAGTACTGCAGGGAGAAGTAGTCATGGAAGCATGATATCATTGAGCGGAAAGCCAATGAATAT GATGGAAGGTAATTCTGGTAATATTGGAACTTCTTCAATTTGTCCACTTCAGGGTTATCTTTTTGGATCAGCTTCCATTG AATTACCAAAAGTAGTACCAGCAAAGAGTAGGACATCACTTGGGGAGCTATTTCAGAGAAGCAAACTAGCAGACCAGGAG ATTAATGAAAAGGGTGATAAAATCAGTGAAAAAGAAGATAAATCTGCCCTGCATCTGGTAAGAAAGAAGCTAAAAAAAAA AATATTGCTCCATACTTGTTCCCGAAACTCCTCCTCAAATAACGGTGGACCTGTTGATTCAGCTAATTCAGCAGACACAA AATTGCGTAAGGTACGTACATACACTTGTAAATTCCATAATAATGTGATATTCGATCGTTATGGTTCTTCTAGTCATTGA
Protein sequence (LotjaGi5g1v0365900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSLITLLQLLGWMHRKFRQNSTEPFKDHLVIGKAGHEIDERSYHLKPNFGSKHVQQIEKEHSLRKSFSGQEAADARVED DEYVYEEDGAMYELFHGFLAIGTLGLGCSTDPSATPTFGNICVENIITEKEDEVTENELKLINDELEKVLGDDECINSAR NSHVSSSTAGRSSHGSMISLSGKPMNMMEGNSGNIGTSSICPLQGYLFGSASIELPKVVPAKSRTSLGELFQRSKLADQE INEKGDKISEKEDKSALHLVRKKLKKKILLHTCSRNSSSNNGGPVDSANSADTKLRKVRTYTCKFHNNVIFDRYGSSSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
Phobius | 1 | 3 | 3 | - | – | |
Phobius | 4 | 14 | 11 | - | – | |
PANTHER | 8 | 299 | 292 | 4.0E-80 | ||
Phobius | 15 | 19 | 5 | - | – | |
Phobius | 20 | 319 | 300 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Gravitropism | The orientation of plant parts under the stimulation of gravity. | ||
Biological process | Regulation of auxin polar transport | Any process that modulates the frequency, rate or extent of auxin polar transport. |
Expression pattern of LotjaGi5g1v0365900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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