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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0002700 |
| Transcript ID | LotjaGi6g1v0002700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex subunit 11; TAIR: AT5G18420.1 CCR4-NOT transcription complex subunit; Swiss-Prot: sp|Q9UKZ1|CNO11_HUMAN CCR4-NOT transcription complex subunit 11; TrEMBL-Plants: tr|I1JB78|I1JB78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:634671..643392) extracted from Lotus japonicus Gifu genome v1.2.
ACTGGGGATAACAGTGTAAGTAACAGTAGAATATAAAAGCGTGTTGTGAATGTAGTCTTCTCCTTCTCCCCCAAATTGTG AAACCCTAACAGAGCAGAGCAATGAGTATTCGGAGATTGAGTGGTGAAGAGTCAATGTCACTCTTCTCTCTCCTGAAAGC AGATCAGCGCCCAATCCATGAGATCCTCGCTGAATTCAACTCCACACTCTCTCGCAATCGCCATTTCACTCTCTGTTCCT ACCTTCTCATGCTCCTCCAGGCAAGGAAACGCTCTCGAAATCTTTTCACATTTTTACATACATGTTATTGTACTACTGGA GATGATGATCATCATTGATCATATTCATGGTGTTGTTATATGTTGTTTTATGTGCAGGACAATAAGGTTCTCACCACTAC TGAACGATTGATAGCTTTTTCTCTGCTACTTGAGGCTTATTCATCTCAGAAACCTGCTTCCAATCCCTTCATAACCTTTA TCATTAATGTAAGCTTTTTTATTCCCCTGCTGCTACATGCTTTATCTAATTCTTACCAGTTAGATCATTTTTCATCGTTT GTCTAATTCTTAGAATTAGAGGGTAATTAGGTAAGTAAGAAGGAAATGTAGAGATGCAAAACGGAGGATTAGATTCATGT GAAAAACGAAGAAAGCCAAACCGATGTGATAGGTACCCTCTGCAAGGCATGCTGCAACGTGGCTTCCTTTTTTTGGTTTC CCTAGGTATTCCCACAGCCGGCAGAAATAAGATTAACCCTCGAGACTCTGAGATCACATTAAGTGGGTAGCAACATGACT ATTGATGGAAAACACCGGTCAACTTACATTTCCGATGCATATCTACATAGAATATATAATTGCATTTCAAAATATTCATA CCGAGCGAGAACATAGTTATTAGGCATCACTTTATGAACCTGTTACGCAATTTCATTTTGGTGCTGTGTGTTTGAATTTT GGAATAAAAATCTAATTAATGAAATTACAATCATGAAACAAACATAATTATGAAAGAAGACAAACATGTAGCTATTAATA TGCAACAACTTGCAGCTGAATAAATCTCGTGTTAAAATGGACTTAGGCAGAGAACAAAATCATACATTGAAATTGACGAA GATAATAAACAGAAATTATTGTGTTGATATTTGTGCTTGGGTAGAGGACACGAGATGAGAGGAGTGGTGACTCTCGGGCG GGAAAAATTGACAAGTTGCATATTGAGATGAAAAATATTCAGGCCGTATTGAAACCTCCCAAACTATTAGCCACCATATC AGAATCATACGTTTTTTAAATGACTTAGATACTTAACAAGTAAGGGTGAAGTATCCATATTGGACAAGTATTTGATATGA TAAATAAAGTAGGGTGGTCAATAGCGTGTGATAGCAGTGCTATCTCAGCGGAGCGGCCACTGGTCGCTACTCGCTATTGA TATGGCATTGTTTTTCATCTCTATACTGTTAAGTGTTTGTTTGGATACACTGTGGAAACCACGGTGAAGCCAAAATCACG CTGGACAGCCACCAAAGGCCAAAGTTAATGGAAATTGCTTCTGTCCTCCATGATTTTGACTTACCGTGTATCCAAACATC CTCTAAGTTAGCTTGTGCTATTTTAATGTCTACATGTTTTATCATCTATTTTGAATGTTTCTAATGGATTTTTTGCAATG CTATTGTGTTATGTGACTGTTGAGATAAGAATGACTTCATGGTTACAGGCTTCCTGTGATGAAGGGTCCATAAAAGTTGA GAGGGCATTTATTCTACAACTATTAGGTGTTGATAGCTCCAACAGTGGCAAAGAGGTTATATACTGTTTTATTGTGTCTG GAAAGCATCAGTGAGATACATTGTTGACAATTTATTTATCCCCTGTAATTATGTCATTTCTGCTCAACTCAACCTATATC CTATTTATATAGTTAAACATCATTTCTCACTATTTATTAGCTACAATTTCTTTGAACTCAGTTTGGGAATAGGAGATTTA TAGACATTCGTACTGACATGTGCAAGTTTGATTTAATACTATTATTGGTGCTCTACAAGAGCTACTCTTAGTCAAATATG GAATAGGCAGAACGAGATTTATGGAGATGTGATTTGTTTCCTGTATTTATTTGGAAGTAGAAATTTTAATCAGATGATGT ATGATATAGGAAGAGTCATTTTCTGATGGTTTTTTTGTTGATTGCCTTATTCATACGAGAGTTCTGGTTTGGTTGTTCTC ATATATTTTCTTTACAGCTTGTTTATTTTGTCTCTCTTATTTGTTTGTTGAAGTTCTTATCCTTGTTCGGTTGTTCCATC TGTTTTTCCTTCTTCCCTCCAAAAAGAGTATCATGATTAAAGCTATCCTCTTACTACTTATTAGTCGCTAAATTTTGTTT TAGGTTATAAAAATTTGTAAATGGGATGTTCTTTTTTGGTTGAACATGTTCCTAACATGTTTTCAGTGTTAGATTCTGTT GCTTGTTTTACTTCAAGATGCATTTAAATATACCGCACATGTCAGTCAACTATACATGGCATGATGCATTTGCTGTTAGT GTAAAATTGCTTCCTCTCTTTCTTGAGATGTTTATCTTCAGTGTTCTGTAATTTCTCACATGTTTTTGTTTTGCTGGAGG ATTGCAGTTTCTTAAACAGTCTGCCTCAGATTATGTGCAAGGATTTGATCAGTCATTGCATGTAAGCTACATACAGATAT GCAAAGTACCGATCCATATTATATCCAATATTGTCCTTCTATAATATCTGACTTTCCTGACATGTATCCCTGCTTCTCAA ATATTTTAGGATTTTCCTTTTCCTGCCTTGCATTATGTTGACTTCTATTCTTATATATCCTCACTGATTCCAGGAGTTTC CTCCACTAGACCAGTTGCAGCAACAGTTTTCTGATAAAGTTCATCCAAAACCATATCATTGTTTATTTAAAGATGGTTCT GTGAGAAACGTGGTCCCAGACCCAGATGTTCCTCCAAGTTGTGATCCAGATTCATCAGAGTATGGCCTTGTACAGTGATT GACTAATTTATGAAGTTTTTATTCATTTTTACTTTTTTTTCTCAATAGGTGCCCATAGGTATTTTAAAATGGCAATTCAA AATTTATATGCTGAACATTATATTAACGATCAATTTATAGGTTTGATTTACGACCTGGAGCAAAACCTAAACTTGGCACC GGAGATAAAGACGAGGCTGTTGTTGGGTTATTGTCAAATCTTTCGCTGGAAGGATTAAGTCCTCACTGGATCAGGCCTCT TCCACCAAGGCTCCCTATACTTGATGGGGAGGTACTGCATAGTTGTGTCTGCAATTTTTAATTCTTGAGGCTTAATTATT CAAACTATTTATGCTGAGAAACCCTTTTCCAGCTAGTTTGGCTCAACCCTGACGACAATCATGAACTTATGTGGGACTAT GGTATGTGCGTTGATACTAGCAGAGGGGCTGCAGTTAGGGACTTAATTGCAAAAGCTCTGAAGGGTGCTCTTGCACCTAC TCAGCAAGAGGTAATTATTATATTATTGTTCTTTGATATAAGATTAAATTCTTCAAAATGAAGAGAAGAAAACATCAAAA GAGGAAAGATACCCAATCCCTGGGCATATCTCAACTCTCAAGGACATGTGCTTACACCAAGCAATCCAAACTTTTAATCT TTTCTCAAATAATTTGCTGAACCTATGAAATATGCTCATAATATCATGTCACACTCCAACCAAATCAACCTAATTGTAGT GTGGATTTCATATTACCATAAAAATGTAGCCTCTTGTCAAAATCATAAAAAAAAATATGGCCCATGGACTTTGGGCAGAC CAAGCATTCACTAAAATAGACAGTGTATGCCTAATATGAAAGCTCTAAAATGAGGAATTCACTTTAGAGAGAAAAGTGAT GCATCTCAACCATTACTGAAAGAAATTAAGGTAGTAGATCTTAGCAAAGCTATGTGCATATGCATGTAATACCAATTGTT GATTTTCTCTTCAGTTCTTGAAATTTCTTACTTATCCTATAACTTATGAGTTTGCATTAGAAGAGCTAAATTCATTTAAG CCATAAAGATACAGGAGCAGGACAATGTGTCTAGAGACGAGGAACTGATTCTGAACACGAACCACACAATACACGATATT ATTATGGAAAGAACCTTGTAAAAATGAGATTACGTGATGGGCCTCTGATTTGTCTGTAAGGATAAATTTCCCTCTGTAGT TGGGCTTTTAAGGAAAGATAAAAGTCCTACTGAGGGATACTTCTTGTATAATAGCATAGATGATCTGCTGTACAGATTCT TTGCTACAAATCACATTGCATTGTGGAATTGGAAAGTGATATCTCTTACCTGTAGTCAGTTCTTAATTTGTCATATGGTG CTGAATTTTATTTTACTTTTTTGATAATCCAGCAAGTCCTGTTGGAGCTGGGAAATGATCCAAAGCTCGTATATCATTGT GGACTGACCCCAAGAAAGTTGCCAGTATGTGTTCTTGTAATCTTGTTAATGTAGCATTGAGCAATTCAAGTCTTGATTTT TGTTCTCACTAGTTTATTTCCTTGTATCAGGAACTGGTGGAAAACAATCCTCTGATTGCAGTTGATGTTCTCACTAAGTT GATAAATTCTCCTGAAATAGCAGAGTATGTGTTTGACCTCTACTACATATGTGTCCTTTATTTTATAAGCCACCCAAATG CTTTTGTTGTCTTTATTTCTATTTACTTATTTATGGATACAGATACTTTACAGTACTTGTGAACATGGACATGAGTCTAC ACTCAATGGAAGTTGTGAACAGGCTTACAACTGCAGTTGAACTGCCGTCGGAATTCATTCACATGTACATAACTAACTGT ATATCATCCTGTGTGAGCATTAAGGTACTTCACTGTGCCTTGTCCTGAGAGTATTTTATTTTATGTAAAACAAAAATATT TGTTTTTCACAAGAGTGTGTTTCTGTATTTAACAGTTATTCGCATTCTCTTCCATTCATATGTTGTAGATCATGTAGGGA TATTGGATTGAGTTTATGTGTGATATTTCATTCATGTATGGAGGTGGCATTGCAAGCTCAAAGATAAGAAGATTATAGGG GAATTTGGAATGACAGAGGAAAATAAATTAAATAGTTTACCTTAAGGACGGATGTGAGGTCTGAAATTTGACAGAAACCA CCAATTTATTTAACATCTTTCACTACCAGAGAACTGCTTTGTAGATAGAACCTTGACTTAACCACAATATTCTTTGAACT GGACAGAAATGTGTCTTCATGAATAGATGTTGCATGCCTAATGCCTGCACATATAATTTTACCGTTTCTGAATTAGCTGC ATGCCTGCCAGAGTGCTTTCTTTTTCAACAAGTCAAATTATCATTGAGGCAATGAACTGTGGTGTACAAGTGAGTGAATT GACATAATAAACCTTTATGTAACCTGGTTGTTGGATTTTATTTACATGTTGCTTGATTAGATATTAAATGATTGCAATGG TGGTAGGTCCCCAAAAGAAGCTATGTAGTTCATTTTCTAAATAAAAATTGAGTTTTTCTATTACTTAATGTGGTATTTTA TTTTATTCCTAAAATTTTTTGCAAGATCCTGTGGTCTAAATGTATTGAGGGCTCTTCCTTGTTTTCTTGCTGAACTTAAA GAGCTGAACATGTGTGGACTGTGGAGGGTTAAATAACCTGCCACCATTGTAATTTTAAGTTTGAACTTATTTTATGATAT TTATAATTGTCTTGTAGAACTTCTTCATTCAACTGGATGAATAAGTTTCATCTCACAATCTGTTTCTTTCTAAGATGGGT TTATGATTTGCTATTTACTATTGTGGATGTTTTTGTGCTGCAATACACTCGGTCATACATAACATATACACTGTTTAGCA GTGTATGCAATTCAAATGATGCGGCCATAGTAAAAGGCAAATTTAAAATAGTTTTTTTGTAACCTCCAGTCTCTCTGTAC TATACATGATTGCTTTACTATTGCGAATTTTCTATATTCATAATTTACATCTAAGCTTTCTACCTTTTCCTTCAGGATAA ATACATGCAGAATAGGCTTGTCAGACTTGTTTGTGTCTTTCTGCAAAGCCTAATTCGGAATAACATTATCAATGGTGAGT TCATCCAGTTTTCTCTGAAGCCTGAAAACTGTTGTTCGTTAAGGCATTTTCAATTTTTGTGTCTAGACATCAATTTCATT TAAGTTAAGCAGAAAGCACAATCCTTCTTGCTTGTGTGAAAATACCATATCACAAGCCTAATGGTTTAAGTATATCTCTT TTGTTTCTGTTTTTCCTTCCTTCCCTTCCTTGCTCTGTCTTTTGTTTTTCCCTTTGTATTTGGGTTCTAGCACCCCTTGT GCTAGTGATTAATACACTTTGCTTATAAAAAAAAATATATCACGTCTGTTATACAAAATTGATGAGGAAATAGAGGGGAA TGTGAACCATAGGATTCAAAATGGGGGATGAAATGCAGGAACGCTTCTTAGTGTGATTTCTGATAGAAAAGTTCCACTCA AGCTTGAAAGAAATTTACCACAGGTATATGAGTTGCGCTGTTGTATTAGGCTGAATGCTGGGCTATTAAGCCAACAATAA AGTAAGATTAGTGTGATTGAGATGAGTATGCAATGACAAGTAAGTGATTATACTAGAAAAAATAAGATGATGAGTTACTG AGAAAGCATCACAGAAAAATTTGGGGTAGCACCTAGTATCGTAAAATGATAGTCTTGCCTTCGGTTGTTTGAGCATGTAT TGAGAAGGTCTGCAGAGCATAGTAACAAGGCTAGATTAGAAGGAAGATAGTTCAATTGTTATGGGTTGAGGGAGACCAAG TAAGCTATAAACTAAACAATTAGGAAGGATTTTGATTTAAGTGGTCGGTCATCAGATATGATTTGTGATACGATATTATG ATGTTTGTTCTATGTAGCTCACCCCACATAATAGAAAAATGCCTTGGTTTTTTGTTATTGTATCATGTATGTACTGCAGG TAACGTAGATGCACAGTTGCATTCATTTTTGTTTTCATCATTATTATGTATTGGGGTAGATTATCATCGCCTATTAATTC AGTATGTCAATTGTAGTTCGATACCTCACAAGCCAATTTGGACACTGTCAAATGTCTAAAACTGTGTAACCTAATTTTGT TTCTTGCAACATTATTGGCTTTTTACCATGGATTACCACTCTTCAGGAAAGAAGTAAAAGATAACCTGTTCATAATATTC AACCAAGCAAGTTTTGGATAAGCATTTTGTTGGACTATAACTGTTCCCTGCGTGTGTTTACACAGATATTGTACTGTTTC AGGCAGTTGTATGAGAACAAAATTATTGTTTGAAATAACCTTGTTTGTTGGCCCTATGCCATTAAATGAATATAAGTAAA AATAAAAGTGACGAATGTTGATCTAGCCTGGTTTCTGTGGGTTGCTTGTTTGTGGTTTGCTGTTTATCTGCAATTATCGA TATTGTGCTGCCTTTGGATGTACTTTGGTTTGGAGTTTACTAGTGTTCCAAAGGTCCTTTTTAATTTTCCTCTAAGACTT GTAAGCATTCGCCCTTTGTATATTTTTTTACTGATGCATAAAAGAGAGGAAAGGGAAATTGGCAGGATGTCACTAATTTT AGTAAATGATCCTTCCTTGCAGTTAAAGATCTCTTCATTGAAGTTCAAGCGTTTTGCATTGAGTTTTCGCGGATTAGAGA GGCAGCTGCGTTATTTAGGCTTCTCAAATCATTGGAATGATTGCTGTTTTAGCCAGTTAATTTCCCCTGTTCGGAGACGT CTTTGTAGATATGTTTCTACCTAGAGCTAGGTAGTTGTGTACTAATTTTCAAATTACAGATAATCATTATAGTTTGTTGA CATTCATACTTCATTACTTTCTTCAAGCTTTAGCATTACTTTAATTTAATTGAAATGGCTATACTGTGTAGTGTTCAAGC AGAGCAAAAGTACGAATTGGGATTAAGAGTATAATTTATATTTGCAACTCCCCCCAGCCTCCAGTTTTTGCTATGGTTAT CCTTGTTGAGCCAAAATAAAATATTTGCACTCTCCAGGGAGGGATTGATCCCTAAACCTTCCCCTCCCCAATCCATATGT CCCCAAACTCTTACCCCTTGAGTTATCATTTCAGGATGTGGAGCCATTTTTCTATCCAATCAAAATTCACTTTTTTAAAT TTATTTTAACACAATTCTCAAACTCAAATTCATTCTTTTAAGCTTAATCTATCAAACTTAATTATATGGAACTAAATTCT ATCAACCTTGATTTTATTCCCTGAACCGAAGTGTCCCACAAATTTGCTAGTTGTGTCTTGTGTGTGCTATATAATTTTTA ATAGAGGGTTTACTCCCTTGAAAAGCATAATAGACCTTGATTAAAATACTGCTTTGACCGGAAAAAATATTACTATTGCT AGGGTTGTTCAATAGTAGGCTTGTGTAGACATGACAATCAAATCCAAGATTGTGGGTATCTCCAACCTTAGCCTCAAATG TGAAGGAGAAAACCCCGCTTTGACCAGATTTAGAGAAAACTGCCCTCGAATTGAAGAGGCGGGGACAATGATGAGGGACC CGATGATGATGGGGGTTGCTATTACCCGACCCCAACTTGCCCAGTTAGGGAAAACTTGGAGGGCAAAAAGCCATATTCCA AC
CDS sequence (LotjaGi6g1v0002700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATTCGGAGATTGAGTGGTGAAGAGTCAATGTCACTCTTCTCTCTCCTGAAAGCAGATCAGCGCCCAATCCATGA GATCCTCGCTGAATTCAACTCCACACTCTCTCGCAATCGCCATTTCACTCTCTGTTCCTACCTTCTCATGCTCCTCCAGG ACAATAAGGTTCTCACCACTACTGAACGATTGATAGCTTTTTCTCTGCTACTTGAGGCTTATTCATCTCAGAAACCTGCT TCCAATCCCTTCATAACCTTTATCATTAATGCTTCCTGTGATGAAGGGTCCATAAAAGTTGAGAGGGCATTTATTCTACA ACTATTAGGTGTTGATAGCTCCAACAGTGGCAAAGAGTTTCTTAAACAGTCTGCCTCAGATTATGTGCAAGGATTTGATC AGTCATTGCATGAGTTTCCTCCACTAGACCAGTTGCAGCAACAGTTTTCTGATAAAGTTCATCCAAAACCATATCATTGT TTATTTAAAGATGGTTCTGTGAGAAACGTGGTCCCAGACCCAGATGTTCCTCCAAGTTGTGATCCAGATTCATCAGAGTT TGATTTACGACCTGGAGCAAAACCTAAACTTGGCACCGGAGATAAAGACGAGGCTGTTGTTGGGTTATTGTCAAATCTTT CGCTGGAAGGATTAAGTCCTCACTGGATCAGGCCTCTTCCACCAAGGCTCCCTATACTTGATGGGGAGCTAGTTTGGCTC AACCCTGACGACAATCATGAACTTATGTGGGACTATGGTATGTGCGTTGATACTAGCAGAGGGGCTGCAGTTAGGGACTT AATTGCAAAAGCTCTGAAGGGTGCTCTTGCACCTACTCAGCAAGAGCAAGTCCTGTTGGAGCTGGGAAATGATCCAAAGC TCGTATATCATTGTGGACTGACCCCAAGAAAGTTGCCAGAACTGGTGGAAAACAATCCTCTGATTGCAGTTGATGTTCTC ACTAAGTTGATAAATTCTCCTGAAATAGCAGAATACTTTACAGTACTTGTGAACATGGACATGAGTCTACACTCAATGGA AGTTGTGAACAGGCTTACAACTGCAGTTGAACTGCCGTCGGAATTCATTCACATGTACATAACTAACTGTATATCATCCT GTGTGAGCATTAAGGATAAATACATGCAGAATAGGCTTGTCAGACTTGTTTGTGTCTTTCTGCAAAGCCTAATTCGGAAT AACATTATCAATGTTAAAGATCTCTTCATTGAAGTTCAAGCGTTTTGCATTGAGTTTTCGCGGATTAGAGAGGCAGCTGC GTTATTTAGGCTTCTCAAATCATTGGAATGA
Protein sequence (LotjaGi6g1v0002700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIRRLSGEESMSLFSLLKADQRPIHEILAEFNSTLSRNRHFTLCSYLLMLLQDNKVLTTTERLIAFSLLLEAYSSQKPA SNPFITFIINASCDEGSIKVERAFILQLLGVDSSNSGKEFLKQSASDYVQGFDQSLHEFPPLDQLQQQFSDKVHPKPYHC LFKDGSVRNVVPDPDVPPSCDPDSSEFDLRPGAKPKLGTGDKDEAVVGLLSNLSLEGLSPHWIRPLPPRLPILDGELVWL NPDDNHELMWDYGMCVDTSRGAAVRDLIAKALKGALAPTQQEQVLLELGNDPKLVYHCGLTPRKLPELVENNPLIAVDVL TKLINSPEIAEYFTVLVNMDMSLHSMEVVNRLTTAVELPSEFIHMYITNCISSCVSIKDKYMQNRLVRLVCVFLQSLIRN NIINVKDLFIEVQAFCIEFSRIREAAALFRLLKSLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 436 | 430 | 1.1E-179 | ||
| MobiDBLite | 172 | 200 | 29 | - | – | |
| Pfam | 309 | 433 | 125 | 1.2E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi6g1v0002700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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