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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0008700 |
Transcript ID | LotjaGi6g1v0008700.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02550.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7LCA7|K7LCA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0008700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1693524..1695609) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACCATCGCAGGTAAATACTTTCTGGTCGACGCAGGATATACAAATGGCCCAGGATATACAAGTAATGTTGCAAATG AGGTCACAACTATTCAAGTATCTTAGGCATGGACAACGTTTCGGGACACTTTAGCAATGGATATGTTTGTTGAATATCAA CATAGGAGAAACTTAGTTTAGGGACAACATGTTATCAGTTGTCTTTGCTTTCTACCTTGTTTGTTGTGTCTGTTATCTGT TTTTCCATTTCTTATGTTGTTTCTTGTTTATTTCTGTAGTTGCTTTGTTCTGTTGTGTGTGTTGGCTCACTTGGAAGAGC CTTGTTTCCAAGCTTTTTATCCTATTAATATTAATTGAATGATTGATCAGAACTAACTGTGGCTTGATTCATCCAATTAT TAGTTAAATGTTTTCAGAAACTCTTCATGTTTATTTATTTTCAAACAGGGTTACAGCTGGACCAGAGACTTGGACAGTGA GGAGCTATTGGAACAGTTGCTATATTGACTTGTTGGTTGCCGGGTAATATTTTATAACTTGAGGATATTCATCATCTTTT TGTTGTTTGATCTGTTTGCTGTGGACACTTCAATTAGGTTCAAGTGCTCTATTTTTCTTCTGGTTATTAGTAATTGTCTA ATGTTTGTTTATGTTTGAAGGAGAGATGAGGGGAAAAAGGAAAATGACGGAAGCTAGTAATGAGGATAAGAAAGATGATA GCAGAGCTTACTTTACTTGGAACTTGGAGATGGACCGTGCACTTGCTGATATACTTAGAGATCAAAGAAGCATGGGAAAC AAGAGTGATGGTGCATGGAAAGGAGTGGCATATAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGAAACTTAT TAGACAGAATGTTAAAAACCGCATCAAGCTGTGGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTT TTGATTGGGATGGAACCAAATATATGATTTCTGTTACAAATGAAGATGCATGGAATGAGTATGTCAAGGTAATGATTTTT AATGTTATTACTATTTAATTAAATTATTGTTTGTGTTAGTATTAATATGCTGTCTATTTTCTTTGTAGTCACATAATGAC GCTAAGAGGTTCCGATTTAAGGTGATTGCTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAAT TGGAGCAGAGACATCCTTGGATGCAGATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGTGGATATTG ATGCTGATGAACAAAGCTCTACAACAAGGAAAAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAAAAGAAT GGGATAATTACTTCAATGAATAAAGTGGCTGAGTCATTGAGTGAATTTGTACAAGCAACTAGAAAAAGGGTGAAAAATGT CCAAGAAGTGGTTCATGATGTGATGGATGAGCTAAAGAACATTTCGGACCTTAATGACACTCAATGGCTAAAAGCAGTGG ATTGGCTTTCTGAAAATCCAAATAAGTTGGAGATTTTGAAAGCTCTTCCCATTGAGAGAAAGAAAGATTACATCTTAGCT TTTATGCACTGATTCATGATTTGCTATAGTTTATGGACCCATTTGTAGTGTTTCCAACTTTCCACTATGCCATTGTTGAG ACTTTCTTTTATTTAATTTTCATTTGGATTGATGTTAGCACTTGTTACTGTTGAGACTTTTTTTTATTTAATTTTCATTT GGATTGATGTTAGCACTTGTTACTGTTGAGACTTTCTTTTATTTAATTTTCATTTGGATTGATGTTAGCACTTGTTAAAA ACACAGTTTTAAATTTAAAGTAATAGGAAATGTGATATCTCTATGAATGTATTAGAAATTTGTGATCCAACTAATTTCAG ATTTTTGAGTCAATTCAGGGGGTTTGGGCCGATTATAAAATTTTGGGTTAATTTTAAGTTAAGTTTTTTTATTATAATTA TCCAAATAATATTAATTAGATTAAAAAAATAAGATAAAGGAAATTCAATTGATTCAATTGAATTCCCTAGCATTACCCAA ACAAAG
CDS sequence (LotjaGi6g1v0008700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGAAGGAGAGATGAGGGGAAAAAGGAAAATGACGGAAGCTAGTAATGAGGATAAGAAAGATGATAGCAGAGCTTA CTTTACTTGGAACTTGGAGATGGACCGTGCACTTGCTGATATACTTAGAGATCAAAGAAGCATGGGAAACAAGAGTGATG GTGCATGGAAAGGAGTGGCATATAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGAAACTTATTAGACAGAAT GTTAAAAACCGCATCAAGCTGTGGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTTTTGATTGGGA TGGAACCAAATATATGATTTCTGTTACAAATGAAGATGCATGGAATGAGTATGTCAAGTCACATAATGACGCTAAGAGGT TCCGATTTAAGGTGATTGCTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAATTGGAGCAGAG ACATCCTTGGATGCAGATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGTGGATATTGATGCTGATGA ACAAAGCTCTACAACAAGGAAAAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAAAAGAATGGGATAATTA CTTCAATGAATAAAGTGGCTGAGTCATTGAGTGAATTTGTACAAGCAACTAGAAAAAGGGTGAAAAATGTCCAAGAAGTG GTTCATGATGTGATGGATGAGCTAAAGAACATTTCGGACCTTAATGACACTCAATGGCTAAAAGCAGTGGATTGGCTTTC TGAAAATCCAAATAAGTTGGAGATTTTGAAAGCTCTTCCCATTGAGAGAAAGAAAGATTACATCTTAGCTTTTATGCACT GA
Protein sequence (LotjaGi6g1v0008700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFEGEMRGKRKMTEASNEDKKDDSRAYFTWNLEMDRALADILRDQRSMGNKSDGAWKGVAYNTAAQMLSSRFNLKLIRQN VKNRIKLWRSWYGIVSDILSQSGFDWDGTKYMISVTNEDAWNEYVKSHNDAKRFRFKVIANWDDIVDLCAKDRATGIGAE TSLDADDIMSKEANEDGAYIVDIDADEQSSTTRKSKQPMEFKKGKSGEKNGIITSMNKVAESLSEFVQATRKRVKNVQEV VHDVMDELKNISDLNDTQWLKAVDWLSENPNKLEILKALPIERKKDYILAFMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 29 | 124 | 96 | 4.3E-15 | ||
PANTHER | 34 | 288 | 255 | 3.0E-102 | – | |
PANTHER | 34 | 288 | 255 | 3.0E-102 | – | |
MobiDBLite | 187 | 207 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0008700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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