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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0029200 |
| Transcript ID | LotjaGi6g1v0029200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Choline-phosphate cytidylyltransferase; TAIR: AT4G15130.1 phosphorylcholine cytidylyltransferase2; Swiss-Prot: sp|F4JJE0|CCT2_ARATH Choline-phosphate cytidylyltransferase 2; TrEMBL-Plants: tr|A0A072VAH1|A0A072VAH1_MEDTR Choline-phosphate cytidylyltransferase; Found in the gene: LotjaGi6g1v0029200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5169976..5174384) extracted from Lotus japonicus Gifu genome v1.2.
GCATATTCACAAATGAACATGAGGATAGAGAAAGAAAGAGAGGGGGAGATAGAGAGAGATAGAGGAAGCTACATTTGAAG TGAGATAGAAACATTCAAAATGGCATCTCCTACACAAGATCGGCCAATTCGTGTGTATGCTGATGGCATTTATGATCTCT TCCACTTTGGTCATGCTCGCTCTCTTGAGCAGGCAAAGAAATCGTATGCTTATTATTTTTTTTTGTTTTGTGTGTGTGTG TTGATTCTATATGGATGTAAAAGAAATTGCTGTTGTAATTGCATGTACCATTTTATAATTTTTTGACCTTTATCACTTAA TTGATAATGACAATGTTTTGGAGTTGCAGGTTTCCCAACACGTACCTTCTCGTTGGATGTTGTAGTGATGCAGTTACAAA AAAGTTCAAAGGCAAAACTGTCATGACAGAAGATGAACGTTATGAGTCACTTCGTCATTGCAAGTATTAATATTACTCTT CTTTTCCTTTTTCATGTTATGAGTAAATGTAAAATCTTGAAGGGATATGACATTAATATTTAAGAAATCGTGGCCTTTAA ATAAGTTTAATGATTTAGAATGTAAATTAAATAACTTATAGATAGTTGGTAGATATTAGAACTATTGATTAGTGAGTTAG TTTGTTATGTAAGTGGTTAATTAGATATGTGAGTGTGCTATTAGTTAGTTGCTATTGCACTGTATAAACAATAAACAGTA CCCACATTACTTTTTATAATGATTGATTACTGGTTGAAATACTTTTTATTTGCACATCCTCTTATTCTTGATTATGTTGA ATGAATTTATGTTCCTTACAGTCTAATCACAACTAGATAGTATAGGGGAAGAAAACAACACCATATATTATATGAATTAT TGTTTGGTTGTGAACAGATGGGTGGATGAAGTGATTCCAGGTGCACCTTGGGTTGTCAATCAAGAGTTTCTTGACAAGCA CAACATTGAATATGTTGCTCACGACTCTCTTCCGTAAGATTAATTTATTTTACTTTACCTCTCTATTTACACAAGTTATG AAATATAAGTGAGATTCTTGCCTGATAAGAATACTAAGTAAAAATATTAACATGATATTAAAATAAGTCTCACAAGAATT TAATTATTTCTAATATGGATTTGTCTACCATGGAGTGGACCAAGAAAATTTTGGTGCACAAGTTAAAAAGGTTTCTCTGT AAATTAGTTTTAAAACTTACGAGTATCGTATGAATAACTTGTACTATATGCTAGTGGTAAAAATATGATTTAATGGTGTA ACATATTTTAGCATTCTCAACCATATAATTTCTTTATATTATAGAGTAAATTTTTTAGTAACACTTTTATTGTTCTATAA TCATTATTATTTGAATACATCATGAATTTGAATTTTCATCGAATTTTTACTTCATGAAATTTGTTACATATCAATATTTA TACAAATATGTACGTTGTTAAAAGGTAATTTTCACATATCAATTATACTTCCACCTTATCAAAATATAAAGAGAAAAGAG ATAAATAAGTGTTATGATAGGTGATGTGATAGGAAATGCAGAGAGAGAGAGAGAGGGATAAGAAGAAAAATGAGTGAAAA TGAGACATGAGAGAAAGTAAGGTGTGAATATATCAAACTCTACTAATAATTGTTGAGGACTCGATCATCGTTTATGATAA GAACTTTCACACTGATAGTCTTGAGCCCCAGATCCACAATTGATCATGTATCAATAATAACTTAATTATCAGTCCAATGG TCACCAAAGAAATTTACGATCCCTTAGATAATTATAGAAATTGGTTCACCTGAAGATATTAGTTCATGTCTCAATTACGG TTGACATGTTGCATCACCTTAATCAATGACTATAGAGATTATGAAAGATATTAAAAGCCACCTAGTTTGGTTTTCAAGCA AAGTAAATTAAATCATTCACAATTGTTTTCAGTTATACCTTATTATCCTGTTTGCGAATGATGATAGCATTCTTTTTCTT AACCAATCGTAGTATTATTTTATGTATACTGTGGATTGTAAAAGTTGGGAAGATAGGACCATGTTTTCTTCAAGTCGATA AAAGGATGTCGAAGACACAAAGAAATGGTTCTTGATTGGCAGTCATATAACAAGTTGATGTGGAAGACTTAGGTTATAAT ACTGATAACATGGCGACGCTACAATCTACACTTCATAGTTAATATATTATAATAGATGAAATTTTTTATACTCATCTTAG TATGACATATCTAGAAGGTATTGTAGCAACTAGACTATATATTCTTATATTAATTATTTTCCATGACTATCGTATGCAAG TTTTGTACTTTTATTTATCTTGATATTGACACATCTAGATAAGGCCTTGTTTAATGTTTATACCTATTTTTACATGTCTT TAAAATAAATGAGAAGATAAAAATAATTATGAATAAAATAAAATGAATGTATAATCTTTTTAATTTGGTAAAAAGTTAAA TGGATGATCTAATTATCATATTTATTGACAGATATGCTGACACTAGTGGTGCTGCAAATGATGTTTATGAATTTGTAAGT AAGGGAATATTTTCTAAATTTCTTAAACAATTTGTTGTCACTTTCTCCTACATATGTAATGTGTTGTATGCTTTTCGGTG CAGGTTAAGTCTGTTGGGAAATTTAAAGAAACCCAACGGACCGAAGGAATATCTACATCTGACTTGATAATGAGGATTGT TAAAGATTATAATCAGTATGTGTTGCGGAACTTGGATCGGGGTTACTCAAGAAAAGACCTTGGTGTGAGCTATGTTAAGG TATGAATTTGTTGTATATATCCCTTTAATGTTTCATGCTTTAAATATGATAGATTATTAATTATATAAAGAGCATTGCTC TTGTACCTTTTTAAAAAAGGCTCGATATTATTTAGTATATTGTTTAAAATATTAGGACTAGATTACAAATCATAAAAGTT CATCTTAATAGATAACATTACTCATTAAAGCAAAAAGGTACAAAACTTGAGTATCAGAGAAATCACCTTGCTCATTCTTA TATCAAAAATGTATAAGATTATGAAATCTTTATCCACAAAACCACAAGACTATATGTGCCAAGACATGATTGATTTCTAT TTCATTAACCACTTAACCGAATTTTATCAAAGAAATTTCAATTCGTAGTAAATCATATTCATTCATTTCTTGTAACAAAT TTTTTGCGCCACATAGCATCATTCTTCTTATATTGTATTTCTCGTATTTCTGTAAACATGGTATGACATATTGTCTCCCA TTTGATGAGAATCATGGTTATTTGGTGTTTAATGTAAACAGGAAAAGCGACTAAGGGTGAATAGGAGTTTGAAAACCCTA CAAGAGAAAGTAAAAGAGCAGCAAGAAAAGGTTAGTGTGAATTTTATACCCATTTAATTTTTTTTTCTATCAAACCCTGT CATTTAGTTAACTTGAAGGGTGAATTGTAAATGACTTTTGAAATGGAAGAGAATAAGAGGTAGTGGGATAAGAGAATACT ATAGAGGTGGAATAAAAATGAATTCATAAAATGGTGTTTATGGATGTATTAGAGAAGTAAGAGAAATTATATGGTGGACT ACATTAAAAAATTGTTTCATCCACGAACCATGTTTTTTAGCACTCAGTATATTTTATTTACAATATCTTACTGATGTGCT AAAATTAATTTATAAATAAACTCTTTTAACTTGTTAACATTTTTTGTTGTGGTTCACATATCTATTGTTCCTCTAGATTC AAATTGTTGCAAAGAATGCTGGTATGCATCGAAACGAGTGGGTGGAAAATGCTGATCGTTTGGTTGCTGGATTTCTAGAA ATGTTTGAAGAAGGATGCCATAAGATGGTGAGCTAATTTTTATAAATAAAAAATTCATTTAGCTTCTAATTAAACTTTTA CTTTTTCTTTGTATTTACTACTTGTTGCTGCCTGAGTATTTATTAGGGGACCGCAATAAGAGATACAATTCAAGAAAGGT TGAGAACTCAACAATCAAGTGATGCATCATGTATGCTCCAAAATAGCAAGGATGATGGAGATGAAGAGTATTATTATGAG GGGGAAGATGATAGTGATGAAGAATATTTTGAAGAATATTTTGATAATAATCATGAGCGTAATCCCAAGAATAATGAGCT TAATACTCATAATAATGGAAAAGACAAGAACACAAGCTAGGCCTACTTTTATGGAGTTGTTGCATTCTTGTCAAAATGTA CAACTTTACACGAGCCTTCTAATTTGCTAGTTTATGGTCAAAATTTTCAACGTTTAATGTATTATTATATACATGAAACT GTTGTGTGTGTCCATTTCCTGAACTTTTTTATATAACTAAAGTCTCATTACTAATATATAGATGGTGAAATTGAAGTTTC ATCATCTTA
CDS sequence (LotjaGi6g1v0029200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTCCTACACAAGATCGGCCAATTCGTGTGTATGCTGATGGCATTTATGATCTCTTCCACTTTGGTCATGCTCG CTCTCTTGAGCAGGCAAAGAAATCGTTTCCCAACACGTACCTTCTCGTTGGATGTTGTAGTGATGCAGTTACAAAAAAGT TCAAAGGCAAAACTGTCATGACAGAAGATGAACGTTATGAGTCACTTCGTCATTGCAAATGGGTGGATGAAGTGATTCCA GGTGCACCTTGGGTTGTCAATCAAGAGTTTCTTGACAAGCACAACATTGAATATGTTGCTCACGACTCTCTTCCATATGC TGACACTAGTGGTGCTGCAAATGATGTTTATGAATTTGTTAAGTCTGTTGGGAAATTTAAAGAAACCCAACGGACCGAAG GAATATCTACATCTGACTTGATAATGAGGATTGTTAAAGATTATAATCAGTATGTGTTGCGGAACTTGGATCGGGGTTAC TCAAGAAAAGACCTTGGTGTGAGCTATGTTAAGGAAAAGCGACTAAGGGTGAATAGGAGTTTGAAAACCCTACAAGAGAA AGTAAAAGAGCAGCAAGAAAAGATTCAAATTGTTGCAAAGAATGCTGGTATGCATCGAAACGAGTGGGTGGAAAATGCTG ATCGTTTGGTTGCTGGATTTCTAGAAATGTTTGAAGAAGGATGCCATAAGATGGGGACCGCAATAAGAGATACAATTCAA GAAAGGTTGAGAACTCAACAATCAAGTGATGCATCATGTATGCTCCAAAATAGCAAGGATGATGGAGATGAAGAGTATTA TTATGAGGGGGAAGATGATAGTGATGAAGAATATTTTGAAGAATATTTTGATAATAATCATGAGCGTAATCCCAAGAATA ATGAGCTTAATACTCATAATAATGGAAAAGACAAGAACACAAGCTAG
Protein sequence (LotjaGi6g1v0029200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPTQDRPIRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDAVTKKFKGKTVMTEDERYESLRHCKWVDEVIP GAPWVVNQEFLDKHNIEYVAHDSLPYADTSGAANDVYEFVKSVGKFKETQRTEGISTSDLIMRIVKDYNQYVLRNLDRGY SRKDLGVSYVKEKRLRVNRSLKTLQEKVKEQQEKIQIVAKNAGMHRNEWVENADRLVAGFLEMFEEGCHKMGTAIRDTIQ ERLRTQQSSDASCMLQNSKDDGDEEYYYEGEDDSDEEYFEEYFDNNHERNPKNNELNTHNNGKDKNTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 226 | 226 | 1.1E-83 | ||
| PANTHER | 4 | 278 | 275 | 3.3E-155 | – | |
| PANTHER | 4 | 278 | 275 | 3.3E-155 | – | |
| CDD | 8 | 159 | 152 | 1.52136E-90 | ||
| SUPERFAMILY | 11 | 142 | 132 | 3.06E-23 | – | |
| TIGRFAM | 11 | 78 | 68 | 3.8E-20 | ||
| Pfam | 13 | 142 | 130 | 7.0E-32 | ||
| Coils | 174 | 201 | 28 | - | – | |
| MobiDBLite | 246 | 308 | 63 | - | – | |
| MobiDBLite | 264 | 281 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi6g1v0029200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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