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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0053100 |
| Transcript ID | LotjaGi6g1v0053100.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein XRI1; TAIR: AT2G01990.1 XRI1-like protein; Swiss-Prot: sp|Q6NLW5|XRI1_ARATH Protein XRI1; TrEMBL-Plants: tr|I3SEF6|I3SEF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0053100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9474313..9476374) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAATACTTTCATTTCTAGGTGCAACACTTTTTAATCTTATATGATGTCACATTGTTGCTCTTGTACTAAGCATCCAC CACAGAAAATCTGCAAAATCCGGAGGTGACCAAAATGTCTTTATTTTCTGGGATAATTAAAGACCAGCTTCCTCAATATG ATCAGACCAAAAATCTTATCAATCAGTAGTTCCAATTGCATACTCAACACTCTAGATAAAGTAACCTATTTATTATTTTG ATTTGCATTGACTAATATATGGTTAGGTAGGTGGGTTTTTTGAGAGTTTATAAAGGGCCCCATTTCAATAATTTTAAGTG AAACACAGTAGTCAGTTTGTTCAGATATATGAATGTTCTATTAACCTGCATACAAGAGTTCTTGACCACACATAATTGCT TGTGTTCTCACTGCCCTTCCTCCATGGAATTGGAGATTGGAGGCACTCATTCAGATCTCACTCTTGGTATATATGTTATA TCCTTTTAAGTTACTCTTTTATTTTCAATTTCTTTGTGGATGCTTCACTTGTTTCCAAGTAATGCTACTAACGGGCACTG AGTACCCGAATGGATGCAAACCAAATAGTATTTATTGGAGCTTATTTTCTGCATTTTCTAATAGATAAGTTCCTATAAGC TTGTACTCAAACAGGTTCTAATTCTACTTGTTTCTGACCCTAGTTTGCTTATTATGCCTGTATGTTGTTGCTGTAGTAGA GTCATGGTTTGCTTCTGATGCATCTACTGGGTATCTTGAAGATGCTATTGTTGGCTGGGATATTTGGTGCAAGCAGCAAA CCTTACCATCCTACTCTCAAGATCAAAAGGTTAATTAACTATGCAAGGGTTCATGTACTTTACACTTGCTCAATTGTAAT TCCCATGTTTTAATTGTTAAATATTTTGAAACTTGATAAGATATTTAATTAATTACAGAAAAGCCAGTATTTGGTTGGTC ATGAAGATCCATTTCCAACATTTTCTTCCACAGCAGCTCAAATGCTTCATGGTATCCCCTGTTATCATTTTCAATCTAGC ATGATTTTGGAAATAAGTCCTTTTATTATATTGTTCATGGTTAGAAATGTAGTGCAAAATTATCTCCTTAACTGTTTGGA TACAGATTATGTGGCCATAAAAGGAGTTTAGAATTTGCAATAAATTACAAACCTAACATTTCCACTTCAGCCTATAAATT TGTTACTAAGTTTAGTCTAAGTGGAATTAATTGAAGCATAACAACCACTTACACTGCAGATTATTTCTTTCCATGCCAGA CCATAAAAAATTCATCACTAGGAACCTATCATCATCACAAAATCAAACACATGCAGCTGCAGCCAAACATGATTCTGCTC AGAAGAAGTGTGCATCTACAGAGTCATCAGATGAGAATGATGCTTCAGTTCCAAGTACAACATTCTTAAAGAGGAGTTAC TTGATTTAGTATTTCATTCCTCTCTCACCTCAGCATCTTTATCTTTTATTTTGTTTTTAGAGTAACAATTGTTCACTCAA GTGTCCTTCTGTCACTTTTCTCTTCAGGAGGTTCTTGGAAGAAAATAGCTTATCCATTTGAGTTGGTGAAGCCTGGAGGA GTTGAAGGGGAAACAACACTCAAAGATATAAACCACCAGATGCTGATGAACCCATCAAAGCCAATTCCACACCCTGTAGG AGATCTTGTCACACATCCCTGCATTTCAACAAGTGGGTTTGGTATCTCAGGAAAAAAAGTTGCAGCCCTTACTAGGATTC ACACCAAGGGTAGAGGCTCCATTACCATAGTTAGGACCAAGGGTTAAGTCCATGTCTGGAAACCCTTATACCATTGATTA TGAATCCAGAATCAATTCGAGGGAGAAGCTGAAGCTGCAAACAAGCTATAAATAGAAGGGAAAACTCTGTATAATATTGT GTCCTTGGTTTTTGTATCATAGTGTTAGTTTATAGGAAATATACTAAATGGACTGAAAAAAATAGCCAAAGGTGTGTTGT AGTGTAAATTCAATTTGAAATTTTGAAAGGTGAGTTGTTTTGATGAAAAATGTTCCCCAGTC
CDS sequence (LotjaGi6g1v0053100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTTCTATTAACCTGCATACAAGAGTTCTTGACCACACATAATTGCTTGTGTTCTCACTGCCCTTCCTCCATGGA ATTGGAGATTGGAGGCACTCATTCAGATCTCACTCTTGAGTCATGGTTTGCTTCTGATGCATCTACTGGGTATCTTGAAG ATGCTATTGTTGGCTGGGATATTTGGTGCAAGCAGCAAACCTTACCATCCTACTCTCAAGATCAAAAGAAAAGCCAGTAT TTGGTTGGTCATGAAGATCCATTTCCAACATTTTCTTCCACAGCAGCTCAAATGCTTCATGACCATAAAAAATTCATCAC TAGGAACCTATCATCATCACAAAATCAAACACATGCAGCTGCAGCCAAACATGATTCTGCTCAGAAGAAGTGTGCATCTA CAGAGTCATCAGATGAGAATGATGCTTCAGTTCCAAGAGGTTCTTGGAAGAAAATAGCTTATCCATTTGAGTTGGTGAAG CCTGGAGGAGTTGAAGGGGAAACAACACTCAAAGATATAAACCACCAGATGCTGATGAACCCATCAAAGCCAATTCCACA CCCTGTAGGAGATCTTGTCACACATCCCTGCATTTCAACAAGTGGGTTTGGTATCTCAGGAAAAAAAGTTGCAGCCCTTA CTAGGATTCACACCAAGGGTAGAGGCTCCATTACCATAGTTAGGACCAAGGGTTAA
Protein sequence (LotjaGi6g1v0053100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVLLTCIQEFLTTHNCLCSHCPSSMELEIGGTHSDLTLESWFASDASTGYLEDAIVGWDIWCKQQTLPSYSQDQKKSQY LVGHEDPFPTFSSTAAQMLHDHKKFITRNLSSSQNQTHAAAAKHDSAQKKCASTESSDENDASVPRGSWKKIAYPFELVK PGGVEGETTLKDINHQMLMNPSKPIPHPVGDLVTHPCISTSGFGISGKKVAALTRIHTKGRGSITIVRTKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 231 | 217 | 2.1E-102 | – | |
| PANTHER | 15 | 231 | 217 | 2.1E-102 | ||
| MobiDBLite | 111 | 145 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Male meiotic nuclear division | A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the male germline. | ||
| Biological process | Female meiotic nuclear division | A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the female germline. |
Expression pattern of LotjaGi6g1v0053100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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