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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0054500 |
| Transcript ID | LotjaGi6g1v0054500.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9781570..9787436) extracted from Lotus japonicus Gifu genome v1.2.
AACTGATTCATCCTCCTCTATTCCAGGCGAGCCAAAACAGCCACGGCCACACCACCAGAAAAAGAGACGATGCGTCCTCC GATGCTGCCACCACCATTCCATCCCTAGTGTCATGAGAGCTTCAATATTTCCTGACATCGGAAATTTCGCCCATTTCAAC ATCTCCAAAAACAGCCGCCAGCCTTTCGCCGTCTCCCGCCGCGCCGGCCACCAGTGCTCCGCCGAGTCTTGAGGAGCTGG TCGTGCTTTCTCCCGTATCCCCCGTGTCCCCGGTGGTTGTACCCACCATGCTGGCCAGGGAGCTTTCGGAAACATGTGCC GTGGTGGTCACATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGCGCCACGCC CTGGTCTCCGCCATCGCAGCCTCCGTTGTTCCGTCATTCATCCTCGCCCGCCCGCGGCCACCGCATCGAGACCGTCCCGG AGTTTCCCTTTGTCGTCAGCGACTCTGATGTGAATGGAGATTTTGATGTAGCATCTGATTGGGAGCCTCTCTCGCCGCCG ATCAAGCCCAACTTCCGGTTATACCACATCTTCAGTTCTAAAGGTGTCGTTGTTTTATTCACCTCTTCCGGTTTCCCTTC TGTGGGTGAGTATGATGAAGTATTTGAATATGAATTTTTCCCGTTTCATGGAAGATAAAGAGAAAGGGGAACGATGGAGC GGAGCGATGACGAATCTATCAGAGATGAGTTCAAATCTAGAATCACTCCACAAGTTTCTCCTCACCAAAGCCGTCTTCTC GACGACGACACCTTCTCCAAAGCCTCTCTCGCCGCCGATCAAGCCCGCACCATCAAGCTCCTCGATCAACGAGTCCACAC CTTGAAGCGAGAGCTCGACGCCGCCATCACCGCCGCCGCACGCGCTCGCTCCGAGAAGCGACACGCCGAGAACGCTCAGA GAGCCGCTGAATCGCGCGCTCTTGAGGTCACCAAGGAGCTCGAAAATACCACGAGTACGCACTCCTCCTTCACACCACAA CAATAACAACAACAAACCCTAACGATTTCTGATTTGTGATTTGTGATTTTTGTTTTTAAGAGGTGTTTGAGCTGCATATG GAAGAACTGCGTGCGAAGCAAGAAGAAATCGCGAAGCGTGATAGTGATATTAAGCTTCTGGAAGCGATTATTCAAACGCT TGGAGGAAAAGAATCGATTTCTACATCTCTGTAAAAGCCAGCCATTGTTTCAAGTATGGTCATTGCCCTTGCTTTTTCAT TATTGTGTAAACTCACGGGCCTATTTTTCTGTTTTAGGGACCTATCTCTTCTTCTTCCTAAGACCAATGTTGCCTGAAAT CTCACACTGCAATTGAACCGTTCTTCCTTTAACAGGGATGGGTCCTTGCCGATTGAGGTGTGGTGGATAAAAGTGATTGG AGGTGCGCCGAGGTGTTGCTGACTTGAGGAGATGATGATAGGGTCTGCGAGGGAAACCCGAAATGGGTGCAGATGACTTC TGTGAGGTTTTGCTTTTGCTGTTGTTGGCCTTTGAAAGGATGGTGCTAGGGAAGAAATGTCTCTTCATTTTAACCTCGAG ATACTTATGGAGTTAAGTATCATTGGAGTTAAGTATCATAGATTTGACTTCTCCATTTTCCCGTTGATCTATCTATTTCT TTTTTCTTTATTTTCTCTACTCATTATTCCATATTTCATGGCAGTGACAGGTAAACAAAGGCTTACGAAATGATTGGGGA AGAGGGGAACAACTTTGGATCAGAGGTGTGTCGAGGTGTTGCTGACTTGAGGGCTGAGGCAATACTATACTATCAAAACT GAGAGAGGAGAGCATAGATTTGTGCCTGATAGTGGTTCTGAGCTTCTTCCAAATACCTCAATATGAGGTTTGTTTCAATT GACTATTGCATATGCTATGTCATTTATTGATGTTTCATTTTTCATGTCTCCTCTTTTGGTATTATATGCATACAAAATGG CAAACAGACAATCCTGAATGTATAAGTGTGTTAATTTAATCTGTGATGTGGGTGTTTGCAGGAAGGACTTTCATAAATTG ACTCTGCAAATAGCTTTTTCCTAACTCATTGTTTTTTTCTTCTGTCTTCATTGCAATTTTAAAGTTTCCCATATTTGTTC TGACGGGGTCCACCATGAGGGAAACCCGAAATATTCTGTGGGGTTTTTGTTGCTATGTTCGGTAGAGTTATGGAGACGCA TCTTTAAGAACATATAATTTATAATCAATCTATAATGGGATGAAGGCTGGGCAATTTAGCTTTGATTATATTCTTTACTA TACTACTATGATATTAATGCATTTGTATTTAGCTGAATCTTTTCTTCACTGTTAGGAATCGGTAAGGTTGTGAAGATGAT CATGGCCACTAAAATATAGTTTACAAGCTTATAAAAGGTAGTCATTTATGTGTTGAATTTCTTACCACTTCATCCCAAAA CATATTCAATTTTTTTATTGTTTCATTAAAGAAAATATTGCTTTTGTTTTCTCCTACCTTGAAAACAAAATTACTTTTCT TTCAATCGTATATATTTCCTTAATTGATTTGTTGATAAGTCATGAATGATATTACTTATTTGGATACTTGCCAATAACTG TTAGAAGTAATTGCTTATTGTCAGTTATGTTTCTTGCTTTTAATCTTGCTCAAAGTGTTTTTATGAGTCTGTTACAAAGT GAAGTGTCTTTACGAGTCTGTTACAAAGTAAAGTGTCTTTAAGAGTCAGTTAGAAACTCTAATGTTATTACTTCTTACAC TTTATTAGGAGACATTGAGTAGGCTTTTCAGTTTCTTCTGATTAATATTTTCATAGTTTTTTGATTGAAATTTCAGCATC ACTTGCCATTGGCATTGTTTTGGCCTGTCTTAAGAATTTTTGTAATTTTTATTTGATCTGATTTTACCGTTATTTCCAAG TAATGTCACCGTCAGCCATACATACCAAAGCTGACTCTTATTATATTATTGATTTGTGCAAAACTTCAAGTACAACTATT AAAGCAATGTGCCTATGTATAATCCGAGTACCATGGTTCCTTATGTCATAAGCTTACCTATTTCAGAGAAGTTAATCCAT AACTAAGCTTCTTTTGTTTCCTGCATTATAATAAGCAGAATGCTACCTAGCAAGCTAGTGTCTACTACCATTATCAAACA CTTGTGCATGTAAATGATAATATGGCACAAGTACTTTGCTTAACAGAAAATTTAGTTTCTTTAAAATAATGATATGTCAT CATAGTGACAATTTATTAATACTTGATACCTGTTTCATCATTTTTATAGTCTTCTAATGAAATTTTGGTGAATGCAACAG TAATTTGCAAAGAAGCAAACATGAGCAGGCCCGGAGATTGGAACTGCAGGTCCTGCCAGCACCTGAACTTTCAGAGGAGA GATTCATGCCAGCAATGTGGGGACTCCAAATATGGAGACAGGATCGATTTTGGGGCATTTGGAGGTGGAATTAGAGGAGG GTCTTCATTTGGGTTGAGCGGTTCAGATGTTTGCCCCGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACT TTGCTAGCCGCTCAAGCTGCTTCAAATGTGGTGCATTCAAGGATGACTTAGTTGGAGGCTTCAGCAGCGACATCTTGCGC TCAAGAGGCGGCTTTGGTGGCGGCGGCGGAGGAAGACCTGGATGGAAATCTGGTGACTGGATATGCAGCAGCCGCTTTTT TGGCTTATTTTAATCTTTATGCTCCTTTCAGAGTTCCTGCTCTTCCTTCTTTTAGTTTCCCTCTCTTTTTCATCTGTCAA AGTATTCAGGACTCAATTGGAGAAGAAAAAATAAAAAATTATAGAAATCTTATCTCTATCGTACTTGAGATTTCTTATCT CACTAATCTGTCCTTTTCATCTTACTCTCTCACATTTTCACTATCTCTTTATCTCCACCTCTTCTGCATCTCCTTATCAC TTTACAGTCGGATCTGTTTCCTCTCCTGCCAATCTCTCTCTCCGGCGTCTCACCGCACACGGCCGTGTCAATTTTATTCG TGTGCTTTGGACAATTTTTGACAACTACTATTGAAGTGTTTCCTTTCCCTATTTGCTGGGTTAATTTCAATTGCTTTACT CTTCCGTATGCAGGCTGACAAGAAAGGGCTAGACCACTGGATGGATGTTGAAGCCTTGAAAGATAAACAAAAACAAGAAA TTGGTAAAGAAACTAGCGGAAAAGTACTATGCCTTTTTAGCTTCTGAAGCTGTTACCAAGCAGATTCCTCATGAGCTTTG ATAATCTCTACAACAAGTAGTGTTTCTGATTTAATTAATTGCTGACATTTAGCAGCTAGCTTTAAATTGCTAATTGATAT AGTGCTTATTGCTTCATCTTTAGGGATTAATATGACCAGTGCTGTCTTTTTTAGGGATTGATTTAATGATTTAATAATTT TCTCTTTCGTCTGTGGGCATGTGTGTCAGTGTGTAAAATGATTTGTGGTTTCAGATTTTGAAGGAAGGGGAGCTTCAAGT TGCTTGTAAAGAGAGAGGGAGTCATTGTTGTCTTGTCAGTTTAGGGACATTGCCACCATTGTGATGCACAAGACTTACAA TCCATGCCATTGACTCCATATCTAAGAGAAAGCTCAGATTTGCTAATTTGGTTTTCAGCTACAAGCCATGGCAATCAGGA TCTGAATTTTTTAAACCCAAACTGGTGAAGTGGTTGAATCACCTGTTTACCAGGCGGGATCCCTTACCAGGCATGGTTTT TAGTTTTTACAATTAGCTTCAACATATCAATTGCTGAAGAAATGGGTTACTCTATTTTTCTTTTTCTGTAAGAGGGTGAG ATTTTTACTAGATGAATTCAGAACGCTGAGATGAGTTCGGATTGGGTTTCAGAATCTCAAACGGAGCCCAGACGGAACGA CACTCTCCCCCACTTGCCGGCAAGGTAGCCGGAGAGTGAGCCAACTCTCAGCCACGCGCTTCACTCGCGCTGGAGGAAGA AAGAGAGTGGAGGCCACTCTCGGGCTTGAGCCACACACGCCTCTGCCGGTTTGGTCCTTGTCATAAATCGGTCAACAACG GTGCAAGCCAGGAAAAACTGAAAATCCAGTGGTTAATCAATTTTAACCAGATCCAAATCTACATGCTCAGGCGGCACAAT TCCTTCACTTCTGTCAGTTCCAAGTAACACCTTTTTATGTGAATTTATTGTTAGAATATAAATTAGACTTGACCTTTATT ACTTTTTGAATTATAAGGACAGATGCAGCACTATAGCCTAGGGAGTAGATATCAACACTAGATATCAAAGATGAGTAAAG AATAGCATCAACGGCTTCACGTTGATGTTTCCTTTTTGAAATTTCAGCAGCTTTATTGTGATTAGGAGCTCTACCTTGAC TATTTGCATCTCTGGTCTCTCTTTATGACATCTTTTTATGGCGGAAGCAGAAACTTTTGTAGAACTGGTTATTGGAACTG GCTTTTGTAGAAGTAGCATTGGTGTTATTAAAAAAACTCTTTAGTTAGCCTTGGAATTGGTTAATATTGAATCTGAAACT ATAAATTTGTGCTATATACAGGTAGGAACCCATTTGTGATTGAAGCATAGTGGTGACTAGAATTACAAACTCAAGTGTGA AGAATTTCCACCAAAGCAACTAAAGTTTCAACTTTGAAGTAGATAATATCAGCACTAGGCAGCACTAGATAATATCCAAT TGCACCGTTATTGTCTTGTCTCATAAATTTGTGATGGTACTCAATATCGAAGAACATTGCTTGCAATGTCATGTGCAGTT GTATATAAATTCCAATAACATGTTCAA
CDS sequence (LotjaGi6g1v0054500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGGCCCGGAGATTGGAACTGCAGGTCCTGCCAGCACCTGAACTTTCAGAGGAGAGATTCATGCCAGCAATGTGG GGACTCCAAATATGGAGACAGGATCGATTTTGGGGCATTTGGAGGTGGAATTAGAGGAGGGTCTTCATTTGGGTTGAGCG GTTCAGATGTTTGCCCCGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCTAGCCGCTCAAGCTGC TTCAAATGTGGTGCATTCAAGGATGACTTAGTTGGAGGCTTCAGCAGCGACATCTTGCGCTCAAGAGGCGGCTTTGGTGG CGGCGGCGGAGGAAGACCTGGATGGAAATCTGGTGACTGGATATGCAGCAGCCGCTTTTTTGGCTTATTTTAA
Protein sequence (LotjaGi6g1v0054500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPGDWNCRSCQHLNFQRRDSCQQCGDSKYGDRIDFGAFGGGIRGGSSFGLSGSDVCPGDWYCAAANCGAHNFASRSSC FKCGAFKDDLVGGFSSDILRSRGGFGGGGGGRPGWKSGDWICSSRFFGLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 33 | 33 | 1.4E-10 | – | |
| SUPERFAMILY | 2 | 33 | 32 | 1.73E-8 | ||
| PANTHER | 2 | 123 | 122 | 4.9E-54 | – | |
| PANTHER | 2 | 123 | 122 | 4.9E-54 | – | |
| ProSiteProfiles | 3 | 32 | 30 | 9.281 | ||
| Pfam | 3 | 28 | 26 | 0.0023 | ||
| SMART | 5 | 29 | 25 | 4.4E-5 | ||
| ProSitePatterns | 7 | 26 | 20 | - | ||
| Gene3D | 49 | 90 | 42 | 1.1E-13 | – | |
| SUPERFAMILY | 53 | 88 | 36 | 3.92E-11 | ||
| ProSiteProfiles | 58 | 89 | 32 | 9.416 | ||
| Pfam | 60 | 85 | 26 | 5.4E-5 | ||
| SMART | 60 | 86 | 27 | 7.0E-5 | ||
| ProSitePatterns | 62 | 83 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0054500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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