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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0149700 |
| Transcript ID | LotjaGi6g1v0149700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tornado 1; TAIR: AT5G55540.2 tornado 1; Swiss-Prot: sp|Q9FJ57|TRN1_ARATH Protein TORNADO 1; TrEMBL-Plants: tr|G7J1I8|G7J1I8_MEDTR Tornado protein; Found in the gene: LotjaGi6g1v0149700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42569576..42571389) extracted from Lotus japonicus Gifu genome v1.2.
CCTGATTATATTTTGATCTTCACTTCTAGATCTTTAAAGCTACAATATCCAGAACAATTGGAATTTTTCCTGATTACAAC TTTCTGATTGAACATTTATCAATTGATGTTGCAGGTGCACCTTCACAACAGAATAAAGGCTCTACAGAATCAACATGGTG CAACTTACTTTCTTGAGAAGTACCTCATTTCAATCAGCATTAATGGAATCTACATCAGAGTAGAGCTTGGAGGACAACTG GGTTACTACATTGACATCCTTGCATGCTCCACCAAAAACTTGACAGAAACTTTAAGAGTCATTCAGCAACTTATAATCCC AGCAATTCAAAGCGTTTGCCATGGAATCACCATGACTGAAAATGTCATTAGACCTGAATGTGTGCGAAATTTAACACCTC CTAGATACAGAAGAACTCAATTTGTTTCTCTTCAGCAACTGAAACAAGCACTACTTTCACTTCCAGCAGAAAGCATGTAT GATTATCAACACACATGGAGTTCAGTTCTGGACTCTGGTAGGCCTACTCTCCAAGAAGGGTTTGATTTAGCACGAGACCT TTTATCGGATGATGATTTCCGGGAAGTGCTGCATCGAAGGTATCATGACCTGCACAATCTCGCTCAAGAGCTGCAAGTCC CACCTGAAAACAACATAGAAGGGCAAGATCAATCTATAACTTCAAGCAGTGAATCTGGAACAGTTGACCCAACCTTTGGG GGCATTGCAAAAGGGGTTGAAGAAGTTTTGCAAAGACTAAGGATTATTGAACAAGAAATAAGAGACTTGAAGCAAGAAAT CCAGGGGCTGAGATATTATGAACATAGACTCCTCCTCGAGCTTCATCGCAAAGTGAACTACATAGCAACCTTCAATCTTC AGGTTGAGGAGAGGAAAGTACCTAACATGTTCTACTTTGTAAACACAGAAAACTACTCAAGAAGACTGATCACAACCATG GTTTCTGGCATGACTGCTCTCCGGCTCCACATGTTGTGCGAGTTCCGGGGACAGATGCACGTTGTTGAGGATCAAATGGG GTGTGAAATGATGCAAGTTGATAATATGGCTGTGAAGGCTTTGGCTCCATACATGAAGAAGTTCATGACGCTGGTAACTT TCGCTCTTAAAATCGGAGCTCATCTCGCGGCTGGAATGGGGCAAATGATACCAGACTTGGGCAAGGAAGTGGCTCATTTG ACTGGCTCTTCAGTTCTCTTTGGTGCAGCTGCAGCTGGTGCTGTAGGGGCTGCAGCAGGTATGGGACGGAGAAACAGGTC CATGGAAGGTTCAAGAGGCATTCAACAGGATTTAAGAGCTGCACAGCAATGGGTGGTTGATTTCTTAAGGGAAAGGAGAT GCTCCACAGGGAAGGATATTGCAGAGAAGTTTGGCCTGTGGAGAGTAAGGTACAGGGACAGTGGTCAAATTGCATGGATC TGTAGGAGGCACATTTACTCCAGATCTGCAGAGATAATTGAAGTGCCAGTTTGAAACTGCAGAAATCCTTGTATAGCAAG ATGAACCTTAGCTTTCAAGTTTTTTTTTTCCTTTTATATATTTCTAATATGAATATGGCATGTATTCAAGTTCTCCAATA CATTTAAAGGAGTATAGATGTTGGTCTAGTAGATTTCAAATTTTAATTTCCAACATGATGAAAGCTTGAACACCAGCAAT TCTCCAATATAGTTGCATATTTGGATTAGTTTCTATTTCATTAGAATATACTTTAAAACCAAGAAGCTTCTCATAGTGTG TTTGGATTAGTGACGGGTAGACACTCCAAAGTAGGGTAGATAACCCAAAGCACG
CDS sequence (LotjaGi6g1v0149700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGGTGCACCTTCACAACAGAATAAAGGCTCTACAGAATCAACATGGTGCAACTTACTTTCTTGAGAAGTACCT CATTTCAATCAGCATTAATGGAATCTACATCAGAGTAGAGCTTGGAGGACAACTGGGTTACTACATTGACATCCTTGCAT GCTCCACCAAAAACTTGACAGAAACTTTAAGAGTCATTCAGCAACTTATAATCCCAGCAATTCAAAGCGTTTGCCATGGA ATCACCATGACTGAAAATGTCATTAGACCTGAATGTGTGCGAAATTTAACACCTCCTAGATACAGAAGAACTCAATTTGT TTCTCTTCAGCAACTGAAACAAGCACTACTTTCACTTCCAGCAGAAAGCATGTATGATTATCAACACACATGGAGTTCAG TTCTGGACTCTGGTAGGCCTACTCTCCAAGAAGGGTTTGATTTAGCACGAGACCTTTTATCGGATGATGATTTCCGGGAA GTGCTGCATCGAAGGTATCATGACCTGCACAATCTCGCTCAAGAGCTGCAAGTCCCACCTGAAAACAACATAGAAGGGCA AGATCAATCTATAACTTCAAGCAGTGAATCTGGAACAGTTGACCCAACCTTTGGGGGCATTGCAAAAGGGGTTGAAGAAG TTTTGCAAAGACTAAGGATTATTGAACAAGAAATAAGAGACTTGAAGCAAGAAATCCAGGGGCTGAGATATTATGAACAT AGACTCCTCCTCGAGCTTCATCGCAAAGTGAACTACATAGCAACCTTCAATCTTCAGGTTGAGGAGAGGAAAGTACCTAA CATGTTCTACTTTGTAAACACAGAAAACTACTCAAGAAGACTGATCACAACCATGGTTTCTGGCATGACTGCTCTCCGGC TCCACATGTTGTGCGAGTTCCGGGGACAGATGCACGTTGTTGAGGATCAAATGGGGTGTGAAATGATGCAAGTTGATAAT ATGGCTGTGAAGGCTTTGGCTCCATACATGAAGAAGTTCATGACGCTGGTAACTTTCGCTCTTAAAATCGGAGCTCATCT CGCGGCTGGAATGGGGCAAATGATACCAGACTTGGGCAAGGAAGTGGCTCATTTGACTGGCTCTTCAGTTCTCTTTGGTG CAGCTGCAGCTGGTGCTGTAGGGGCTGCAGCAGGTATGGGACGGAGAAACAGGTCCATGGAAGGTTCAAGAGGCATTCAA CAGGATTTAAGAGCTGCACAGCAATGGGTGGTTGATTTCTTAAGGGAAAGGAGATGCTCCACAGGGAAGGATATTGCAGA GAAGTTTGGCCTGTGGAGAGTAAGGTACAGGGACAGTGGTCAAATTGCATGGATCTGTAGGAGGCACATTTACTCCAGAT CTGCAGAGATAATTGAAGTGCCAGTTTGA
Protein sequence (LotjaGi6g1v0149700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQVHLHNRIKALQNQHGATYFLEKYLISISINGIYIRVELGGQLGYYIDILACSTKNLTETLRVIQQLIIPAIQSVCHG ITMTENVIRPECVRNLTPPRYRRTQFVSLQQLKQALLSLPAESMYDYQHTWSSVLDSGRPTLQEGFDLARDLLSDDDFRE VLHRRYHDLHNLAQELQVPPENNIEGQDQSITSSSESGTVDPTFGGIAKGVEEVLQRLRIIEQEIRDLKQEIQGLRYYEH RLLLELHRKVNYIATFNLQVEERKVPNMFYFVNTENYSRRLITTMVSGMTALRLHMLCEFRGQMHVVEDQMGCEMMQVDN MAVKALAPYMKKFMTLVTFALKIGAHLAAGMGQMIPDLGKEVAHLTGSSVLFGAAAAGAVGAAAGMGRRNRSMEGSRGIQ QDLRAAQQWVVDFLRERRCSTGKDIAEKFGLWRVRYRDSGQIAWICRRHIYSRSAEIIEVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 332 | 332 | - | – | |
| PANTHER | 2 | 462 | 461 | 6.2E-249 | – | |
| MobiDBLite | 179 | 199 | 21 | - | – | |
| Coils | 211 | 238 | 28 | - | – | |
| Phobius | 333 | 355 | 23 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 356 | 366 | 11 | - | – | |
| TMHMM | 365 | 387 | 23 | - | – | |
| Phobius | 367 | 387 | 21 | - | – | |
| Phobius | 388 | 462 | 75 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0149700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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