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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0167800 |
Transcript ID | LotjaGi6g1v0167800.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RWP-RK domain containing protein; TAIR: AT1G06500.1 hypothetical protein; Swiss-Prot: sp|P52323|RPOD_BORBU RNA polymerase sigma factor RpoD; TrEMBL-Plants: tr|I1KY08|I1KY08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0167800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45329531..45334224) extracted from Lotus japonicus Gifu genome v1.2.
TCTCACTTGGCTTCCGTCATTGGGTTGAAGTGAAAAAGCTATTTCCAATGTCGTAACTCCACAGTTTCAGTTTCAGTTTC ACACCCGAAATCAAACACTTTCACTTTCACTTTCACTTTCACGTTGTTCCATTGATTCCTCAAAAGCACACACACGTTTG TCTGATGTCTCAGGTAATCCTCAAAACCCTCACTCCATTTTGCATCAAAATGTCTTTTTTTTTCTTATGGGTAGTTTAGT TCTTACATAAAATCATAAGGGTTCTTTCTTACCATGTTTTCTGCTTCTGGGTCATTGCAAAGTTTTCTCCTTTAACCCAT TATGATTATGAAATCTGAAATGAAGAAGAACCAACAAAAAAAATTCATTGGTTTTTTTTTGTCATTCCTATTGGTAATTG CTATGTAGTATTTCAGAATTCTGCTGGTTTGATAAGGGAAAGGAAAATGTGTTTGGCATTAGCAACAGAAAAGCAGGAAG AGAATTTAAGAATCAATAGATGAATGTGAATCTGAATTATGAGATAAGAAAATATTATAGATATTTTTTTTTTTGTGAAA GTGGTGAATAATTGAAATAAGCATGGGGTATTTTATCTGAGAGAAGTTCAGACTTCAAACAATTGGTAAAGAAAAAGAAA GAAAGGGGTTTATTGGTTTTTGTTTTACCTGAAAGAAGTTCATAACTTAGACTTCATCCATCTGTTTTTTTTTTTTACTT GCTTTATGCATTTGGGGGGTTTTTTGGTTTTTTAAAGTATCATGTAAATTTTATGATTTCTAATGAGTCAATCTTTATGC TGCAGGTGGGGTTTCAAAAGTCGTATAACTAACTGGACTTTGTGACTGTGAGGATGGTTTTGATAAGTGGAACTGGAAAC AACAAAAAGTAAGCTTTAAACTCTCTTGAAGTTTGTTCATTCTTTTATTTTACTATTTTGCGGGAACCAGGTTTTCCATT TCACCCTCAGCTCCTGTTCTTTTAGTAAACTTTGTTAACATTCCTTTATCATAAGACTTGTGTGCTTCCTAACAAGTATG TTCTATCATTTATTTTCATATTTCAAGCCTCTTATTGCACCTAGTGGTTTTATCCAGCAAATTACTGATAATCAAACTAA CAGGGAGCATTTAAGTCCATTGGCTGCTTTTAATAATTTAGCCACCAATAACTTCCACTTGGTCTGTCTTTCAAAGATAA AGATGCACAAATGCCTGGGCTTGACACCTAGTTTATGTGTGTGACTCTTTGTGTGTCTGTATTGAGAGCATATCAAGTGA GAACACTTTATTATTGTGAGATATGAGAAAATTTAACTATAACCATCCAATAAAAGTTAATTACCCAGATTAGTTTTTTA AGTAAAATTCATGTGAGAATGTAATCCACCATCACTGCCAGGCTCCAGATATCCATGGCCACTTAATCAAGTCTTATGGT TTTGATGGATAAAGGGGTGTGGAAGGATAAGAAAATGGGGAAAAGTTGTGGGAGGATGGGGACTTCAATCTCCATTGTTT CAAAAAGGAAGTAATGAAGAAGGGATTATTCAATTATTTCTGGGAGGGTAGGGTGATATCATAGGCAACCTGAGTCAATA GTTTTGTTGCGATTTGAGGAAATTAATCATTGATGGTTATTATTGAAATAGTCAGGGGTGCTTTGTATGAAGGAGCATTG AGCATGGCACGGTTTTTCTGGAATGTGGAACAAACAAAGGGCATAAAGAGGGAGATTGAGAAGAGATTGTCAAAGGAATT GATTGACTAATCAATTGAATAACAGTTACTGACCAGATTAATTGCTGTATATAATTGTAGTTGACCAAGCCTGTAATTAG GATTAATTGTTGATTAGCTGTTACAGATCAGGGAAATTATTCCCATAATTAGGAGAGATATTATTTCCATATTTGTAATA TGTTATCAGTATAAAGTTAGCTCTATGCTGTGTACTCAGCATCAAGACAGTATTTTCATTCCATATTTTCCTGAGTTTGA CAGAGATGTCACATAACTTTTGATGCATGTGTGGATGTATATATGTGTGTGTGAGGTTGATCCTCAATATTTCCACTTTG TTAAGAATTAAATACAGAAAACCTAATATATGACCTTGATAAGTTATATGTTCGGTTCTCTCTCTTATTATTTATGTAAA TGTAATGTATTTCCCTAATTCTTAAAACCAGTAGTCACTTATTTTTACTAGTACTAATGTACTATCTATTTTTAAAGTAG GTATTTGTGGTGAATCTATAGATTTATCCACAGGAATTGGAGTACTTTTTTATATGTTGTCTGAGAAGTTTTGTGTGCTG TAAAGAAGAAAAGCTTTTCTGATGATGTGAAATCTATTTTGTTGTCTAATGTCTACTGCTCTATGGTTGGAAAAGAATGT TCTAATTTCAAGGATAGTTTCTTGTCATTTGCCTTTTTAATTGGCTAAAGTGGTCTGTATTGTCTTGTTTATGGTTCTCA GATCAGATAGTGGTTATTTTGGAGGGCTTTCTTTGCTAGGTAATTAGAAAGATTGGAAAATTTTGATTATCTGATGGCTG TTTTGTTTATCTTATCCCTGTTCTTATACTTTTTTTGCGATTGGTAATAAAATTCTTTTGTCAAAATAACTATTCTTGTG TTATGCTTTTCATATTTTCATTGTTCCTGTTTATTGTGTGTTTTGAAGTGATTAAATCGTAAAAAATATATTATGTGAAA TGCCTTTCAACCACTCATGTCTAGATTGGATCATGTCGAGAAATCTCCACATATAGAGATTGGAGAGGTTACCTTGTTCA AATTCCCTCAGAAGCATAATTTGATCTTCAATAAAAAATTAATTATTGAGATTTGAGATTCCTCTATTAGTTTCCCATTA AATCTTACCAATATTACCAAACAATAGTGAAAAGTCAAACTTTTATCTCAGTAGCAGGGATACATCAAAACTTGACAATG TATTAAATGGAAACATCCAAGCTGTATAGATAATAGCAAATTATATGCATAGACTTTCTAACCTGTTTGTGTGTGTGTGT AGAAAATAGAGTTCTATGTAAACATTGTCAAATTGCATGAAAGATTACTAAAAATCACAAATCAATGTAGAGGAGGCATC ACAGTGGCTGAGTGGCACATAGGTCAGAAATTTGAACGGGGCTTACCAAAAACATGATCAGAAATTTGAACAGTCACTGA GTGGCACAAACGAAGAAAGAAAGTTTCATCGTAAATGAGACGTGTGAAAAACCAGGCCATAGTCGGCCAGATAGCCATTG AATGTTAATGTAGGAGGGAATTGGCCAATACTTATTGCTTTGAAGAATCAAAGGTTTTTTAAGGTTTCTTGTCTATCCAA AGGGGAAATAAACTAATCCTATGGATAAAACAACATTATTTTTTTTCTACGTGTACCCATAGAGTATCCATGGTGTACAC AAATTGTGCCCAAAGCCTATGTCCAACCTCATAGACTGATCTGTTTTTTATGTTATGTTTAATGCAGTGTTTTGCAACAA ACACATGATGAGAGGGCCAAAGCACAAGGTGGTATGGTGGTGAACAATTCACACCAGCAAGGAAACAGGAGTGTTGAAAG TGGGCGTACACAGAATTTGTCCAACACAGGGTTGATCAAAGAAATGACAAGAATGGATGAATTCAAGTACGGGTTTCCTT CAGAAAGCTTATCAACTACCTCAAATAAATGGTGGGGAAGTAGTGATCATGGCGATTCTACTGGCACCAACCCAGGCACA GCCAAGAGTCAACCTGAAGAAAGAGGAGGGGAAGCAGAAAAGGTGCCGTGTAAAACTGGAAACGCTGAAAACAGTGAAAC TACTCAAGGTTCATCTTTACTAACAGAAGAAAATGTGGCGTGTAAAACTGGAAACGCTGAAAACAGTGAAACTACTCAAG GTTCGTCTTTACTGACAGAAGAAAATGTGGCGTGTGAAACTGGAAACGCTCAAAACAGTGAAACTCCTCAAGGTTCATCT CTATTGACAGCTGTAAGGAAAAGGGCTGTGGAAGAAGGAAGGGAAGCATTTAAATTAGGTGTTTTTCGGGGCTACGGTGT AAACAAGCTACGCAAAAGGGAGAAAATATTGCTCCACCAAATATTCAAATCTTCATTGCCAAGGTCGTGGATACATGACT TGTGATTTGGGACCATGTAATTCTGCATGGCTCAATTCAGATTCTGATTGCTGCATTGAATGTTAATCAACTTCATGAGA TTGTTCCTTCTTCTTTTCTGAATGCTGTGGTTTTATCCTCCTAGTTCACTAGGACTGGTGTTTGGAGCTAAATGACATGT GACTCTTATTCCTATTCACTTCCTGACACTTCTTTATTAAAAGGCTAATGATATTGCAGTGAGAGATCAAGAGGACAAAT TAGATAAGACTTGATCAAAATCATTTACATGATTAGTTTAGTTATTGACCATGGACACACTTTTTCCTATTGGAAATGAA TTGTTTGTCATTTTAGTTGATTTTCACTTGTATTTAAGAATGTGAGGGAATGTGTTAGAAATGCAATTCCTTATCTCCAA GATGCCTCTCAACTCTCAAGTCACATGAGACAAAAGCTGATGAATTTTATCCTCTGACCAAGGAAACTGTGTATTATTTT TTTATCATCTTTCAGGGTATGGGTTCCAAGGAACCTCATAGTGCATGGGAGGGC
CDS sequence (LotjaGi6g1v0167800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTGATAAGTGGAACTGGAAACAACAAAAATGTTTTGCAACAAACACATGATGAGAGGGCCAAAGCACAAGGTGG TATGGTGGTGAACAATTCACACCAGCAAGGAAACAGGAGTGTTGAAAGTGGGCGTACACAGAATTTGTCCAACACAGGGT TGATCAAAGAAATGACAAGAATGGATGAATTCAAGTACGGGTTTCCTTCAGAAAGCTTATCAACTACCTCAAATAAATGG TGGGGAAGTAGTGATCATGGCGATTCTACTGGCACCAACCCAGGCACAGCCAAGAGTCAACCTGAAGAAAGAGGAGGGGA AGCAGAAAAGGTGCCGTGTAAAACTGGAAACGCTGAAAACAGTGAAACTACTCAAGGTTCATCTTTACTAACAGAAGAAA ATGTGGCGTGTAAAACTGGAAACGCTGAAAACAGTGAAACTACTCAAGGTTCGTCTTTACTGACAGAAGAAAATGTGGCG TGTGAAACTGGAAACGCTCAAAACAGTGAAACTCCTCAAGGTTCATCTCTATTGACAGCTGTAAGGAAAAGGGCTGTGGA AGAAGGAAGGGAAGCATTTAAATTAGGTGTTTTTCGGGGCTACGGTGTAAACAAGCTACGCAAAAGGGAGAAAATATTGC TCCACCAAATATTCAAATCTTCATTGCCAAGGTCGTGGATACATGACTTGTGA
Protein sequence (LotjaGi6g1v0167800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLISGTGNNKNVLQQTHDERAKAQGGMVVNNSHQQGNRSVESGRTQNLSNTGLIKEMTRMDEFKYGFPSESLSTTSNKW WGSSDHGDSTGTNPGTAKSQPEERGGEAEKVPCKTGNAENSETTQGSSLLTEENVACKTGNAENSETTQGSSLLTEENVA CETGNAQNSETPQGSSLLTAVRKRAVEEGREAFKLGVFRGYGVNKLRKREKILLHQIFKSSLPRSWIHDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 33 | 228 | 196 | 1.7E-21 | – | |
PANTHER | 33 | 228 | 196 | 1.7E-21 | – | |
MobiDBLite | 73 | 131 | 59 | - | – | |
MobiDBLite | 73 | 99 | 27 | - | – | |
MobiDBLite | 116 | 131 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0167800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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