Transcript — View — Lotus Base

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LotjaGi6g1v0254200.4

Overview

Field	Value
Gene ID	LotjaGi6g1v0254200
Transcript ID	LotjaGi6g1v0254200.4
Related isoforms 3	LotjaGi6g1v0254200.1 LotjaGi6g1v0254200.2 LotjaGi6g1v0254200.3
Lotus japonicus genome version	Gifu v1.2
Description	rRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0254200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:56617768..56619387) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCAGAAAAGAAGCCAGTGGTTGGGTTGACATGGCAACCGCAGTTGCCAGTTTCATCTTCATTAAAAGCCACAGATGG ATCCCATATAAAAACTCAAATCGGGGCATCAAGAAGCACTGTTTGGAAACCCACTTCAGAGCTGGCTGATGGCCTTTTTG CTCCTCCAAATGATCCTAGAAAATTGAACAAGTTACTGAGAAAACAAGTTAAAGATACTGCTGGGAAAAATTGGTATGCA TTAGATTGTTCTCTCAATCCTCATTTTCTGAACACAAGCAGGGTTTGGATTTCGTTGGTTGTTTATCTATTAATTTTACA CTGGTTAGCTGGTTATAGTGGTAGTAACATTTTCTTTAAAAAAATGTGTGGGTCCAAAGCCTTAAATCACTAAACTATAT AAAAGGAGGCATAGGAGGAGTAATGCACCAGATCAGATCATGAGGTGCAATGCTGCTTATCATAATTAGGAGAGAGAAGG GCCAAACTAACTGTCTTGTGGGGAGTGTGTGTGGATCTGTCTAATGAGACTCAGAGTATAAGCATGGAAGGGGTAGGGAG GCTGAGGTAGGCTGGGAAATTGGGAGTGACTCAGTCTCTCAAATTGCTTTGGATAGCTCTTGTATACAACTCACTATCGA TATCATTTGATCCAAGGCCAAATGCATCTATCTTCATTTCATTTACATAAGCAATATCTTCATGTCAATTTTATTCAGTT ATTTTTTCCCTTGATTTTTCTTTTTCTCTTGGTTGGAAACTATAAAATGGATTAAATATTTATCTAAATATATTGAAATC TCTGTCAGGTTCAACATGCCGGCTCAAACCATCACCCTTGAGTTGCAGAAAGATCTCAAGTTATTGAAGGTGCTTTTTAG TATTAACATCTCTCTGCCTTTTTATACACTTTTTCGTTCTACATTGTATACATTAGCAAGTTAAACTTTCATGCAATGGA TATGTACATTTGAGGGTGGGTGAACACACAAACTTGAATGTATCCCGTCAATTTGTGTCATGCTATCTAATCTTGTTTTG GTACACCGCTCTTATCTTGAAACAGTTGAGGGGTGCCATTGATCCCAAGCGTCACTACAAGAAGGGTGATTCAAAATCAA AGACACTTCCCAAGTATTTCCAGGCAAGTTCATTTTTGTATACTACTACTATGTTGATCATTGACAAGCATATGCTTCAA TATAGATTTGCTACATCAAATATGGTTAGCTTTAATTTTTGGATCATTGGAATATCATCAGATGGGAACAGTTGTAGATT CTCCATTGGACTTCTTCTCAGGAAGATTAACAAAGAAGGAGAGGAGAGCATCATTAGCAGATGAGCTGCTTGCTGATCAA AACCTTGTAGCCTATAGGTAAGATAGGCAGTGAAGTATATAATTGTCTGCTTAAATAGACAATGCCTCTCAATGAAAATA GAAACTTGTTCATGCACTTTCCTATGCTCGTCAGGCTACTTACTCGTTGTTTATCAACTTTTTTCTAGGAAGCGGAAGGT TCGAGAAATTGAAGAACAAAACAAACCAGCTGGGAATGAAAATTGGAAGATTAAAGGCAGGAGTTCCCGGAAGCGAGCAA AAGAAAAGAGGAATCGCTGA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0254200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAGAAAAGAAGCCAGTGGTTGGGTTGACATGGCAACCGCAGTTGCCAGTTTCATCTTCATTAAAAGCCACAGATGG ATCCCATATAAAAACTCAAATCGGGGCATCAAGAAGCACTGTTTGGAAACCCACTTCAGAGCTGGCTGATGGCCTTTTTG CTCCTCCAAATGATCCTAGAAAATTGAACAAGTTACTGAGAAAACAAGTTAAAGATACTGCTGGGAAAAATTGGTTCAAC ATGCCGGCTCAAACCATCACCCTTGAGTTGCAGAAAGATCTCAAGTTATTGAAGTTGAGGGGTGCCATTGATCCCAAGCG TCACTACAAGAAGGGTGATTCAAAATCAAAGACACTTCCCAAGTATTTCCAGATGGGAACAGTTGTAGATTCTCCATTGG ACTTCTTCTCAGGAAGATTAACAAAGAAGGAGAGGAGAGCATCATTAGCAGATGAGCTGCTTGCTGATCAAAACCTTGTA GCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAACAAACCAGCTGGGAATGAAAATTGGAAGATTAAAGGCAG GAGTTCCCGGAAGCGAGCAAAAGAAAAGAGGAATCGCTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0254200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPEKKPVVGLTWQPQLPVSSSLKATDGSHIKTQIGASRSTVWKPTSELADGLFAPPNDPRKLNKLLRKQVKDTAGKNWFN MPAQTITLELQKDLKLLKLRGAIDPKRHYKKGDSKSKTLPKYFQMGTVVDSPLDFFSGRLTKKERRASLADELLADQNLV AYRKRKVREIEEQNKPAGNENWKIKGRSSRKRAKEKRNR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21686 View details on PTHR21686 Search for proteins/transripts with this domain View external data on PTHR21686	4	197	194	5.8E-74	IPR039883 Show description in modal box View details on IPR039883 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08698 View details on PF08698 Search for proteins/transripts with this domain View external data on PF08698	71	166	96	1.2E-36	IPR014810 Show description in modal box View details on IPR014810 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	171	199	29	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0254200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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