Domain Predictions — View

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PF08698

Source: Pfam

Description

Fcf2 pre-rRNA processing

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0291649.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rRNA-processing protein fcf2-like [Glycine max] gi\|356539758\|ref\|XP_003538361.1\|	Domains IPR014810 PF08698 PTHR21686 PTHR21686:SF12 mobidb-lite	5
Lj6g3v1513610.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rRNA-processing protein fcf2-like [Glycine max] gi\|356539758\|ref\|XP_003538361.1\|	Domains IPR014810 PF08698 PTHR21686 PTHR21686:SF12 mobidb-lite	5
Lj6g3v1513610.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rRNA-processing protein fcf2-like [Glycine max] gi\|356539758\|ref\|XP_003538361.1\|	Domains IPR014810 PF08698 PTHR21686 PTHR21686:SF12 mobidb-lite	5
LotjaGi2g1v0068600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0068600_LC	Domains CYTOPLASMIC_DOMAIN IPR014810 IPR039883 NON_CYTOPLASMIC_DOMAIN PF08698 PTHR21686 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM TRANSMEMBRANE	12
LotjaGi2g1v0274000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0274000	Domains IPR014810 IPR039883 PF08698 PTHR21686 mobidb-lite	5
LotjaGi2g1v0274000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0274000	Domains IPR014810 IPR039883 PF08698 PTHR21686 mobidb-lite	5
LotjaGi4g1v0098100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0098100	Domains IPR014810 IPR039883 PF08698 PTHR21686 mobidb-lite	5
LotjaGi4g1v0183600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I1JA59\|I1JA59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0183600_LC	Domains CYTOPLASMIC_DOMAIN IPR014810 NON_CYTOPLASMIC_DOMAIN PF08698 TMhelix TRANSMEMBRANE	6
LotjaGi6g1v0254200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0254200	Domains IPR014810 IPR039883 PF08698 PTHR21686 mobidb-lite	5
LotjaGi6g1v0254200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp\|O42877\|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr\|I3S6D9\|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0254200	Domains IPR014810 IPR039883 PF08698 PTHR21686 mobidb-lite	5

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	10.00