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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0292700 |
| Transcript ID | LotjaGi6g1v0292700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box plant-like protein, putative; TAIR: AT4G22030.1 F-box protein with a domain protein; Swiss-Prot: sp|O65451|FB333_ARATH Probable F-box protein At4g22030; TrEMBL-Plants: tr|A0A151T6S4|A0A151T6S4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0292700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61072465..61074104) extracted from Lotus japonicus Gifu genome v1.2.
AAATACACAACGTGTGAGACAGGCATAGACTTCTCAATCCCATTGTTATCTGCATACATACATACACATATATAAATGTA CATGTGCTATGAAGAAAACACCAATTCAATCTCAACTTAGTCTTCAATCCCATACAAACCTAACCATTTTTTAACCCCTT CATAGAACAGCAATACAATAGTACTGAATACTAACACATGGCAACATTTATGGTTTCAAACAGAGTTCCTTCTTTGTCAA ACTGCAGTACAAGAAGAATTTCTGCTACAATGAATGTGCCAAAGATCCAAGTGACCAAAATCTCCACCCCAAAGCTTCCC AGCAAAATTTTGGTTCCACAATTGAATCAGCTAAACAATTACACTCTAGGTACCGCCACAGCACATGTAAAAGAAGATCC TCACCTTTTAGGCATTTACACAAACAGTTCTCCAGAACCTAGAAAAAACACACCAAATCATTCTATGGAGGTTGTGAAGC TTCACTTGATCATGGAGAATGTAGCAGACAGAATGGAGATGCACAAGAATATTGGAGCACAGCGTGATAATTGGAACCAC CTTCTACTGACATCAGTTAACATGATGATTCTCTCTGCTGCATCCATGGCTGGCCTTGCAGCTGTTGCTTCAAGTGGAGC AGCACCTCTGGTGGCTCTGAAAGTTTCCTCCACAATTCTGTACATGGCTGCCACTGGCTTACTAGTGATCATGAACAAAA TCCAGCCATCACAGCTAGCAGAGGAGCAGAGAAATGCTGCTAGGTTGTTCAAGTATCTTCATGAGGAACTCAGAACAAAG CTTGCTCTTGGGAATGGGGGTTTTACTGAAAATGATGTTGATGAAGCAATGGAAAAAGTTTTGGCACTGGACAGGGCCTA CCCACTTCCTTTGTTAGGCACAATGCTAGAGAAATTCCCTCAAACTGTGGAACCAGCAGTGTGGTGGCCTAAATGGAAGA AGCAAAGGAAGAATCAAACACAAGAAGGGTTTGGTGTGAAATTGAAAGGGAATAATGGATGGGATGCAAGGTTGGAAGAG GAAATGAAACAGATTGTGAAGGTTTTGAGGAAGAAGGACAAGGCAGATTACTTGAGGTTGGGTAAGGAAGTTCTGAACCT TAACAAGATACTTGCAGTTTCTGGTCCAGTACTCACTGGAATTGCAGCTTTGGGTTCATGTTTCTTGGGTTCTGTGAATT CATCTTGGCCTGTGATGCTTGGGATTATTGGTGGAGCTTTGGCAAGTGTTGTTAACACATTAGAGCATGGTGGGCAATTT GGGATGGTGTTTGAAATGTACAGGGCAAATTCTGGCTTCTTTAAGTTCATGGAAGAGAGTATAGAGCAAAATGTTAATGA GCAAGACACTGATAGAAGAGAAAATGGGGAATTGTTTGAACTCAAAGTAGCTTTACAGCTTGGTAGGAGTGTCTCAGAAC TCAGGCAATTTTCTGCTGCTGCATTTTCATCCTCAGCTGAAGATGGTGATAGTCAAGAATTTGCTAGCAAGCTTTTCTAG TATTGTTGATTACCATGTCACTTTTTTTATTTTTGTAAATAAATTTGTAGAGTTTAACTTTTGTTCATGTTATTCATCAA TCAAATTCAACAAGTTGATAAGCAAGAGCAAAATTGAAAA
CDS sequence (LotjaGi6g1v0292700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTGCCAAAGATCCAAGTGACCAAAATCTCCACCCCAAAGCTTCCCAGCAAAATTTTGGTTCCACAATTGAATCA GCTAAACAATTACACTCTAGGTACCGCCACAGCACATGTAAAAGAAGATCCTCACCTTTTAGGCATTTACACAAACAGTT CTCCAGAACCTAGAAAAAACACACCAAATCATTCTATGGAGGTTGTGAAGCTTCACTTGATCATGGAGAATGTAGCAGAC AGAATGGAGATGCACAAGAATATTGGAGCACAGCGTGATAATTGGAACCACCTTCTACTGACATCAGTTAACATGATGAT TCTCTCTGCTGCATCCATGGCTGGCCTTGCAGCTGTTGCTTCAAGTGGAGCAGCACCTCTGGTGGCTCTGAAAGTTTCCT CCACAATTCTGTACATGGCTGCCACTGGCTTACTAGTGATCATGAACAAAATCCAGCCATCACAGCTAGCAGAGGAGCAG AGAAATGCTGCTAGGTTGTTCAAGTATCTTCATGAGGAACTCAGAACAAAGCTTGCTCTTGGGAATGGGGGTTTTACTGA AAATGATGTTGATGAAGCAATGGAAAAAGTTTTGGCACTGGACAGGGCCTACCCACTTCCTTTGTTAGGCACAATGCTAG AGAAATTCCCTCAAACTGTGGAACCAGCAGTGTGGTGGCCTAAATGGAAGAAGCAAAGGAAGAATCAAACACAAGAAGGG TTTGGTGTGAAATTGAAAGGGAATAATGGATGGGATGCAAGGTTGGAAGAGGAAATGAAACAGATTGTGAAGGTTTTGAG GAAGAAGGACAAGGCAGATTACTTGAGGTTGGGTAAGGAAGTTCTGAACCTTAACAAGATACTTGCAGTTTCTGGTCCAG TACTCACTGGAATTGCAGCTTTGGGTTCATGTTTCTTGGGTTCTGTGAATTCATCTTGGCCTGTGATGCTTGGGATTATT GGTGGAGCTTTGGCAAGTGTTGTTAACACATTAGAGCATGGTGGGCAATTTGGGATGGTGTTTGAAATGTACAGGGCAAA TTCTGGCTTCTTTAAGTTCATGGAAGAGAGTATAGAGCAAAATGTTAATGAGCAAGACACTGATAGAAGAGAAAATGGGG AATTGTTTGAACTCAAAGTAGCTTTACAGCTTGGTAGGAGTGTCTCAGAACTCAGGCAATTTTCTGCTGCTGCATTTTCA TCCTCAGCTGAAGATGGTGATAGTCAAGAATTTGCTAGCAAGCTTTTCTAG
Protein sequence (LotjaGi6g1v0292700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVPKIQVTKISTPKLPSKILVPQLNQLNNYTLGTATAHVKEDPHLLGIYTNSSPEPRKNTPNHSMEVVKLHLIMENVAD RMEMHKNIGAQRDNWNHLLLTSVNMMILSAASMAGLAAVASSGAAPLVALKVSSTILYMAATGLLVIMNKIQPSQLAEEQ RNAARLFKYLHEELRTKLALGNGGFTENDVDEAMEKVLALDRAYPLPLLGTMLEKFPQTVEPAVWWPKWKKQRKNQTQEG FGVKLKGNNGWDARLEEEMKQIVKVLRKKDKADYLRLGKEVLNLNKILAVSGPVLTGIAALGSCFLGSVNSSWPVMLGII GGALASVVNTLEHGGQFGMVFEMYRANSGFFKFMEESIEQNVNEQDTDRRENGELFELKVALQLGRSVSELRQFSAAAFS SSAEDGDSQEFASKLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 97 | 97 | - | – | |
| PANTHER | 49 | 416 | 368 | 2.5E-172 | ||
| Pfam | 70 | 392 | 323 | 2.7E-154 | ||
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 98 | 121 | 24 | - | – | |
| Phobius | 122 | 126 | 5 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 127 | 147 | 21 | - | – | |
| Phobius | 148 | 286 | 139 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 287 | 309 | 23 | - | – | |
| Phobius | 310 | 314 | 5 | - | – | |
| TMHMM | 313 | 335 | 23 | - | – | |
| Phobius | 315 | 331 | 17 | - | – | |
| Phobius | 332 | 416 | 85 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0292700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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