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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0297500 |
| Transcript ID | LotjaGi6g1v0297500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dihydroxy-acid dehydratase; TAIR: AT3G23940.1 dehydratase family; Swiss-Prot: sp|Q9LIR4|ILVD_ARATH Dihydroxy-acid dehydratase, chloroplastic; TrEMBL-Plants: tr|I1M137|I1M137_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0297500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61499807..61504987) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCTCCACTCTGCTCCGCCGTCATCCACCGCAAAACAATGCAGTCCACTCTCTTCTCCCCCACCATTTCCCCTCTCC TCCCCACCTTATCCCACTCCCATCCTCGCCGTACAGTGCGAGCCTCCGTCGCCGCCGTCGAAACCCAGACCAAGCTCAAC AAGTACAGCTCCCGCATCACCGAGCCCAAGTCTCAGGGCGCCTCTCAGGCCGTCCTATACGGCGTGGGCCTCTCCGAAGA TGACATGACCAAACCCCAAGTCGGCGTTTCCTCCGTCTGGTACGAGGGAAACACCTGCAACATGCACCTCCTCGACCTCT CTGAAGCCGTCAGGGAAGGTGTTGCTCAGGCCGGGATGATCCCCTTCAGGTTCAACACCATTGGGGTGAGTGATGCTATC TCCATGGGTACCAGAGGTATGTGCTATAGCTTGCAGTCAAGGGACCTCATTGCTGATAGCATTGAGACTGTCATGGCTGC TCAGTGGTATGATGCCAATATCTCCATTCCTGGCTGTGACAAAAATGTAAGAAATTTTCACTCCTTTTTTACCTTATCTC TTTTGAGCATGTTTTGCAACTCAGTTCAGTTCAGTTCAGTGATGTGGTGTCTCTTCGTATTTTTGCAGATGCCAGGTACA ATCATTGCAATGGGGCGGCTCAACAGACCCAGTATTATGATTTATGGTGGGACTATTAAGGTAAATGCCATTCTAGATTG GAAGTAGTTCAAGTATGTTTTCTGAAATCATATGACTAAAGGGGTGCTGAACTTTGTCATTTTGTTGTTCAAAACTCTAA CACTCCCACTTCCTTAGAAGGGGGGGGGGAAACAATTCCTCAGTCGATGAAAGTATCACTGTGCAGGCCTATTTTTTGTT ATTATAGTTATCTGATAAATTTGTAGTTGGGGTTGGATAGTCAGCAAATGTTTTATGGTGGGTGGTTTGTGTGTGTGTGC TTTCTGTGATTTAAGGGTCATACTCGTACTTGACATCATAGAATTTAAGATAATCATATGGTTTTTTTTGAAGGGGATCA TACCACTTTGTCAATATTTACAAGGAATTTTATTGCAATTTGATGTAGGGTAGAGTAAAGCAATTCCCTTGATTAAAATT AATGTGCTTCAGGGGAAATTTGGATAGTAGGGAAGTCGGATTACAACCACTATTTTAAATTTACAATGTCTTGGAGCTTT TTTAACTGCAAGCTGCACATGCAATCCATGTAACACTTATGCAGTTAATATCAAGTATGGGTTGTTTATTTTCTTATAAA CTGATGAAAATTTCTTTTTCCCTCTGAATTGTGGTTCGATTCAGGTGCATTTGTTAATTTTGTTTCTCTGTTTTTTTTTT CAGCCTGGTCATCATCAGGGTAATACATATGACATAGTGTCTGCCTTTCAGGTATGAGAAGCCATTATTGTTTGAATCTC TTCCCATCTCATATTGTGGTTGAATTACTTTTCTTTCTTTTATTTCATACTCATTCAAACAGAACTCAATTTTGTTAAAT AAAAGATTTTATTTCTTCAAGAGTAGGAGAAGAAATATGACAGAGAAGTGCATCAAACCTTCTTTGAACAATGAGAAAAT GAAAGTGAATAAAAAAAACTGAAAAGAGCTCTCCTAGCCCTTTTCTCTTATGAAAATATTCTCTTTTTTTGGGAGACATT GTAAGGGTAACTTTTATATTGCCACTGAGGAAGAATTGAATCATTTTGGTTTTTGTATACTCTTTTGAGTAATTGAGTTC TCTTTTTAAACAAATAAATATGTTATTGCTCATGTTGGAAATACTAAAGTTCATAATATAAATTTGTTTTCCCTAAATTT CAAAACTTGAATGTGTTTGGTTTTCATGTAGTGCTATGGAGAATATGTGAGTGGATCCATTAGTGATGCCCAGAGACAAA GTGTTATCCGTAACTCTTGCCCTGGTGCTGGGGCTTGTGGTGGAATGTATACAGCTAATACCATGGCATCTGCAATAGAA GCTATGGGAATGTCAATTCCCTATAGGTAAGTATATGTGTAGATTCTTATGTGTCTTATTTTAAACGTGCTTATCTTTAT TTGCTGTTAATGTAGCTCATCTACCCCTGCTGAGGATCCTCTAAAGTTGGATGAGTGTCGTTTAGCTGGGAAATATATTC TGGAGCTATTGAAGATGGACTTGAAGCCCCGAGACATAATCACTCGTAAATCACTACGCAATGCAATGGTTATTGTTATG GCACTTGGTGGATCTACAAATGCTGTTTTGCATTTAATTGCTATTGCCAAGTGAGTGAAGCTTTGTGCCAGAGATCCTAT TGATATCCATTAATCCTCAGAGAAACCTCATGTAATGATTTTCGCAGGTCTGTTGGCATTGATTTGACTCTTGATGATTT TCAAAAGGTTAGCGATGAAGTTCCTTTTCTTGCAGATCTTAAACCCAGTGGGAAATATGTTATGGAAGATGTTCACAAGG TATGCATTTAATGTTTTTTGTTAACTAATTGAAGGTTGCGTCTATTATTATTTTTTACTAGTTATGCTTATGGTTCTTAT GCTATTTAATATTTATTAATCCTGCTTGAAATTCCTTTTCAATTCTCTTTTTGATAGATCGGAGGCACCCCTGCAGTTAT GCGATACCTTCTTGAGCAAGGATTTTTAGATGGTGACTGTATGACTGGTATGTCCACTTACCTTTTTGTGCTAAGAACAG AGTATTCTTTTCCGAAAAAATATCCATGTCTAACATACATATGTCTCCTCTCTAGTCACTGGAAAGACCCTAGCTGAAAA TACAGAACTTGTCCCTCCTTTGGCAAAAGGGCAGGTATGAGCATGATATTTTTCATGTTAAACTTTATCATATCCGAACT GTTCCTGATTACTGTTAATAATTTGATCTTTTATAAAGTACCAATTTCCTGTATGTGATTCAGGAAATAATAAGGCCAAT AGACAATCCCATTAAGAAGACAGCACATATCCAAATATTATATGGGAACCTTGCACCACAGGGATCTGTTGCCAAAATTA CTGGAAAAGAGGGACTGTACTTCTCTGGTGAACTTTCTTGCTCTGTTTTCTTGGTGTTATAAAATAATTGGTTTGCCCAA ATTACATTTCTCTTTGCTACAATTTATTAATAATGGCATATTTCAACAGGTCCTGCACTTGTTTTTGAAGGGGAGGAGGC AATGATTTCTGCCATTTCAGAGGACCCTTCAAGTTTTAAGGTATCTATTTTACCTAGAAATAAATGCATAGGGATAGTGC TGATCCTAGGGTTGTGTAGAGACTCACCATACTGTTACTTGAATGAAGTCTCAGTAATTGAGATTTTGAATAGGTTTAGT TCATATGTGTTAATCAACCTATATTAACATCAAATTATGAGATCCATGTTGATCACAGTCTTGAATCTCTTGATGACATT GGGTGGAAGCACAAACAAAATGAAAATGGGGGCTGGGTATTGTTATAGCAAAATGACATAGAAACCACTAAGCAGAGCAG AAGGGAAATTCCTTTAGATAAAATCTGTGAGTTTCATTGTGTACTGTTCTACCCATAGAAAATCCTTTGACTGGCAAGCA AACAATCTTCTAGGACGTGTATTCTTTAATTCTATTATAATTATTTTAAGTACCTAAAATAAATTGATAAAGTCCCTAAA AATAATACCTAGAAAGGCTACCATTAAATTATCAATTGAGAATATCAGTATACTTAAGCAACATAATTGTGCCTAAAACA ACATGGCTTAGTCCTGCATATTAAACCATTAGATGTTAATGTTTCCTTATTAAACTTCAGAGTTTCGCTTTTTAAAATGA AATATGATTTTAGTAATTGAAATTACGGAATGATTCTGTTAAAATGCAATTTAGTTGAGCAGTAACCACGACCATCAATT TATGACATATATTTTATGGTGTAGTTGTGAATCCTTTAGCAACTATACACTTGTCTCAAAAGCGGGATGCAACTTTTTTC CAAAGGAAGAATTCTTGCTTTTGGCAGAATATATGTTGGAATTGCTTCTCAATTTTAAAGTAAAACATACACTTAGTTGC TAGAGTCTCAGTGGTTTGCTTCTGTTTTGATTATTACACTTGTTGCACAAATTTTTTATTTGGAGCTATAGATCATAGTT CAAATTGCTGCTATTTTTAAGATCTTTTCTGATTCCTCCGTATGACATTTAACTTTAGGGGAAAGTGGTTGTAATAAGGG GAGAGGGACCTAAGGGTGGTCCGGGCATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGCAGGCCTCGGAAAG GTATATCTTGCATCTCCTTATTTATTCTATTAATTAAGTTTGTAATGGTGGTATGCGCATTGTGATTTACAACTATGAAC TGACCTGAAGGGCTTTTAATTTTATCTTATTTTTATACTTTTTGTTTAGCCAAATGTATGTATAAACTCTAAAGTCGCTT GATTATTAGTTTTTTAAATAGAAACTATAATGCATCTTTCATGATTTATGAACTTACTCTGAACTGGTATTTTTTTTTGA TATTTTTTTGACGCTTCAGGATGTTGCACTATTGACTGATGGAAGATTTTCTGGAGGTTCACATGGGTTTGTGGTTGGTC ATATATGCCCTGAAGCACAGGTGAATTGACAATGCGGTAGCGTTTTGGTTTATTGAAAAAATGAAATAATGACTGTTATG TGATGATTAACCATTATGACTTGACATGCTTTTATTTTCCATTTCTACTGTGACATGTTCAATTGTTCATATTTTAATCC ATATGAAGATAAAGAACCTTAATTATAGTTTGTTGTAGCGAACCAGTAATATTTACACTTGCTTCATTGATTTGATAGGA AGGTGGTCCAATTGGTTTAATTCAAAATGGAGATGTTATCAACGTTGATATCAAGAATAGGAGAATTGATGTTTTGGTAC CAGATGAGGAGATGGAAGCACGCAGGAAGAAATGGACCGCTCCTCCATACAAAGCAAACCAAGGAGCTCTCTACAAGGTA TGAGAACTGGAACACCTTATGGACAAAAAATATGAAATATATTTATAAAGATCTGATTACCTTTTATTCCTTTATCTTAT AATGAATACTATTTTGGCGAGTTTAGTCCCTCTAATTATAATTGTTACTGTTAGAATTTAG
CDS sequence (LotjaGi6g1v0297500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTCCACTCTCTTCTCCCCCACCATTTCCCCTCTCCTCCCCACCTTATCCCACTCCCATCCTCGCCGTACAGTGCG AGCCTCCGTCGCCGCCGTCGAAACCCAGACCAAGCTCAACAAGTACAGCTCCCGCATCACCGAGCCCAAGTCTCAGGGCG CCTCTCAGGCCGTCCTATACGGCGTGGGCCTCTCCGAAGATGACATGACCAAACCCCAAGTCGGCGTTTCCTCCGTCTGG TACGAGGGAAACACCTGCAACATGCACCTCCTCGACCTCTCTGAAGCCGTCAGGGAAGGTGTTGCTCAGGCCGGGATGAT CCCCTTCAGGTTCAACACCATTGGGGTGAGTGATGCTATCTCCATGGGTACCAGAGGTATGTGCTATAGCTTGCAGTCAA GGGACCTCATTGCTGATAGCATTGAGACTGTCATGGCTGCTCAGTGGTATGATGCCAATATCTCCATTCCTGGCTGTGAC AAAAATATGCCAGGTACAATCATTGCAATGGGGCGGCTCAACAGACCCAGTATTATGATTTATGGTGGGACTATTAAGCC TGGTCATCATCAGGGTAATACATATGACATAGTGTCTGCCTTTCAGTGCTATGGAGAATATGTGAGTGGATCCATTAGTG ATGCCCAGAGACAAAGTGTTATCCGTAACTCTTGCCCTGGTGCTGGGGCTTGTGGTGGAATGTATACAGCTAATACCATG GCATCTGCAATAGAAGCTATGGGAATGTCAATTCCCTATAGCTCATCTACCCCTGCTGAGGATCCTCTAAAGTTGGATGA GTGTCGTTTAGCTGGGAAATATATTCTGGAGCTATTGAAGATGGACTTGAAGCCCCGAGACATAATCACTCGTAAATCAC TACGCAATGCAATGGTTATTGTTATGGCACTTGGTGGATCTACAAATGCTGTTTTGCATTTAATTGCTATTGCCAAGTCT GTTGGCATTGATTTGACTCTTGATGATTTTCAAAAGGTTAGCGATGAAGTTCCTTTTCTTGCAGATCTTAAACCCAGTGG GAAATATGTTATGGAAGATGTTCACAAGATCGGAGGCACCCCTGCAGTTATGCGATACCTTCTTGAGCAAGGATTTTTAG ATGGTGACTGTATGACTGTCACTGGAAAGACCCTAGCTGAAAATACAGAACTTGTCCCTCCTTTGGCAAAAGGGCAGGAA ATAATAAGGCCAATAGACAATCCCATTAAGAAGACAGCACATATCCAAATATTATATGGGAACCTTGCACCACAGGGATC TGTTGCCAAAATTACTGGAAAAGAGGGACTGTACTTCTCTGGTCCTGCACTTGTTTTTGAAGGGGAGGAGGCAATGATTT CTGCCATTTCAGAGGACCCTTCAAGTTTTAAGGGGAAAGTGGTTGTAATAAGGGGAGAGGGACCTAAGGGTGGTCCGGGC ATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGCAGGCCTCGGAAAGGATGTTGCACTATTGACTGATGGAAG ATTTTCTGGAGGTTCACATGGGTTTGTGGTTGGTCATATATGCCCTGAAGCACAGGAAGGTGGTCCAATTGGTTTAATTC AAAATGGAGATGTTATCAACGTTGATATCAAGAATAGGAGAATTGATGTTTTGGTACCAGATGAGGAGATGGAAGCACGC AGGAAGAAATGGACCGCTCCTCCATACAAAGCAAACCAAGGAGCTCTCTACAAGTATTTTGGCGAGTTTAGTCCCTCTAA TTATAATTGTTACTGTTAG
Protein sequence (LotjaGi6g1v0297500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSTLFSPTISPLLPTLSHSHPRRTVRASVAAVETQTKLNKYSSRITEPKSQGASQAVLYGVGLSEDDMTKPQVGVSSVW YEGNTCNMHLLDLSEAVREGVAQAGMIPFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMAAQWYDANISIPGCD KNMPGTIIAMGRLNRPSIMIYGGTIKPGHHQGNTYDIVSAFQCYGEYVSGSISDAQRQSVIRNSCPGAGACGGMYTANTM ASAIEAMGMSIPYSSSTPAEDPLKLDECRLAGKYILELLKMDLKPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIAKS VGIDLTLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVMRYLLEQGFLDGDCMTVTGKTLAENTELVPPLAKGQE IIRPIDNPIKKTAHIQILYGNLAPQGSVAKITGKEGLYFSGPALVFEGEEAMISAISEDPSSFKGKVVVIRGEGPKGGPG MPEMLTPTSAIMGAGLGKDVALLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIQNGDVINVDIKNRRIDVLVPDEEMEAR RKKWTAPPYKANQGALYKYFGEFSPSNYNCYC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 23 | 412 | 390 | 1.31E-139 | ||
| PANTHER | 32 | 584 | 553 | 1.4E-301 | – | |
| PANTHER | 32 | 584 | 553 | 1.4E-301 | – | |
| Hamap | 41 | 591 | 551 | 40.452 | ||
| TIGRFAM | 55 | 579 | 525 | 4.9E-220 | ||
| Pfam | 71 | 580 | 510 | 5.4E-212 | ||
| ProSitePatterns | 159 | 169 | 11 | - | ||
| Gene3D | 414 | 564 | 151 | 2.4E-52 | ||
| SUPERFAMILY | 415 | 586 | 172 | 8.63E-52 | – | |
| ProSitePatterns | 501 | 512 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Dihydroxy-acid dehydratase activity | Catalysis of the reaction: 2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O. | ||
| Biological process | Branched-chain amino acid biosynthetic process | The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. |
Expression pattern of LotjaGi6g1v0297500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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