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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0313100 |
| Transcript ID | LotjaGi6g1v0313100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G03250.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250; TrEMBL-Plants: tr|I1M1J2|I1M1J2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0313100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63117432..63119673) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGTCCTTAGTTTGCTTCAACATTTATGATTTTGATGCAGTTTCCATTGCTTTCTAGAAGTGGCCTACTGAAGAAACT CATTGCAGAGTGCTCGGATGGATCAAGTTGTGTTTTGCAGCTTCATGATATCCCTGGTGGATCTATAACATTCGAGCTCA TCGCCAAGTTTTGCTACGGTATCAAAATAGAAGTCACAGCATTGAATGTAGTCCCCCTCAGGTGTTCAGCTGAGTACCTC CAAATGACTGAAAGCTACAGCGAAGGGAACCTTATTAGACTAACAGAGTCTTTTCTCAATGAAGTTTTCAGCAATTGGCC AGATTCCATAAAAGTCCTTGAAACATGTGAGAAAGTGCTACCCTTTGCAGAGGATCTCCGCATAGTATCAAGATGCATTG ATTCCGTGGCTATGAAGGCTTGTTCAGATCCCGAGTTATTAAATTGGCCTGTGACACGACGAAATAGCAATGAAAACAAT TCTGCAGAAAGTGTGTTGTGGAATGGAATTTCTTCTGAGAGGAATCTAGGTGATGATTGGTGGTACTATGATGTGTCTTT GTTAAGTCTGCCCCTATTTAAAAGATTGATTTCGTCCGTTGAATCAAAGGGAATGAAATCTGAGAGTGTTGCAGCATGTC TCATATATTATCTTAGGAGGTTTCTCCCCTTGATGCATAGGCAATCAAGCTTCACTGACACAAGTCATGCAACCATTCCT ACAACTTCTGATGCAGATCAAAGGGCTGTGCTGGAAGAAATTGTGGAGTTAATTCCAAATAAGAGGGGTGTCACATCGTC AAGGAACCTTTTCAGGCTTCTCCGAACCGCAATGATATTACAGGCAAGTCCATCATGCAGAGAGAATTTGGAGAAAAGGG TAGGAGCTCAGCTAGACCAGGTTGCAGGTGTAGATCTTCTCATTCCAAATAGGGTATACTCGGTTGAGACCATTTATGAT GTAGACTGCGTTCAGAGGATTGTTGATCATTTCATGTCTATATACCAGCCTGGATCATTATCAGCTTCTCCATTGATACC AGAAGCAGGGGGGGCTGATACATTGACGCCTATGACAATGGTTGCAAATTTGGTAGATGGATATCTTGCTGAAGTGGCTT CAGATGCTAATTTGAGCTTGACTCAGTTTCAGGCACTTGGTGTTGCAATTCCAGATTATGCTAGGCCACTTGATGACGGT ATATACCACGCAATAGATATATACCTTAAGGTTAGATCATTTTGGATACCTTGTCTACCCTCAAGAATCTTGTTCATATA TGATATCAACAAACAAACAAACAAATAAGCCAACAACTCAAGAATAAACAAAACTTTTATCCCCCTAAGCGAGGTCAACT ATATGGATCACAGATCCATATTGAAGATATCAGCTAGTTTTTACATTGGCCGCGGGAAAGCCTAACACAATTTTCATCTT AGCATTATTATTATTTTCCTTTGTGCTCAACTATTTCAAAGTTGATAATACTAATGTAAGACATCCATTACAACTACAGG TACATCCATGGCTAACAGATTCGGAACGGGAGCAATTATGCAGACTGATGAACTGCCAGAAGCTCTCATTGGAAGCGAGC ACTCACGCAGCGCAAAATGAGAGATTGCCTCTCCGAGTGATTGTTCAAGTCCTATTTTTCGAACAGCTTAGACTTCGCAC ATCAATATCTGGTTGGTTCTTTGTTTCTGAAAATCTTGACAGTTCACAAAACCCAAGTGGAAGACTTGGCCTCCCGAGGA CTGGTGGTGGTGCTTATCAACTGGACTCCGCGGAGGAAACAGAAAGTGTGAGGGAACATCTTAAGGATCTGGAGAAGGAA TGCTCAACCATTCGAAAAGATCTGCAGAAGCTGACAAAGACTAAGAAAAGTTGGAGCATTTTCCCAAAGAGGTTTGGCTT TAGAAGAAAGTCAGAGTGTTGCAATCCAAAAGAATCAAATAGCTGCGATGTAAAGACACAGCCATCCAATGTGAATGAAA ATCCAAAAAATGAAAGTAGTTGAGGGGGGTTTACCGAACTTCATAGCTCAAGTTAGTGGAGATTATTTGTACACTTCTGC TTTACATTCTATTTATTTACCTATGCAAATGTAGTTGTAACCTCTCAATCAAATTGTTTTTTCTTTTCTCTTTTTTCCTT TGAAAATATGGTGGTCTATTAACCAAATATTGAACTATTATTAACTAGAGGGTCGCTTGATTTACCTCCCCTCAGTAAAA AC
CDS sequence (LotjaGi6g1v0313100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTGATGCAGTTTCCATTGCTTTCTAGAAGTGGCCTACTGAAGAAACTCATTGCAGAGTGCTCGGATGGATCAAG TTGTGTTTTGCAGCTTCATGATATCCCTGGTGGATCTATAACATTCGAGCTCATCGCCAAGTTTTGCTACGGTATCAAAA TAGAAGTCACAGCATTGAATGTAGTCCCCCTCAGGTGTTCAGCTGAGTACCTCCAAATGACTGAAAGCTACAGCGAAGGG AACCTTATTAGACTAACAGAGTCTTTTCTCAATGAAGTTTTCAGCAATTGGCCAGATTCCATAAAAGTCCTTGAAACATG TGAGAAAGTGCTACCCTTTGCAGAGGATCTCCGCATAGTATCAAGATGCATTGATTCCGTGGCTATGAAGGCTTGTTCAG ATCCCGAGTTATTAAATTGGCCTGTGACACGACGAAATAGCAATGAAAACAATTCTGCAGAAAGTGTGTTGTGGAATGGA ATTTCTTCTGAGAGGAATCTAGGTGATGATTGGTGGTACTATGATGTGTCTTTGTTAAGTCTGCCCCTATTTAAAAGATT GATTTCGTCCGTTGAATCAAAGGGAATGAAATCTGAGAGTGTTGCAGCATGTCTCATATATTATCTTAGGAGGTTTCTCC CCTTGATGCATAGGCAATCAAGCTTCACTGACACAAGTCATGCAACCATTCCTACAACTTCTGATGCAGATCAAAGGGCT GTGCTGGAAGAAATTGTGGAGTTAATTCCAAATAAGAGGGGTGTCACATCGTCAAGGAACCTTTTCAGGCTTCTCCGAAC CGCAATGATATTACAGGCAAGTCCATCATGCAGAGAGAATTTGGAGAAAAGGGTAGGAGCTCAGCTAGACCAGGTTGCAG GTGTAGATCTTCTCATTCCAAATAGGGTATACTCGGTTGAGACCATTTATGATGTAGACTGCGTTCAGAGGATTGTTGAT CATTTCATGTCTATATACCAGCCTGGATCATTATCAGCTTCTCCATTGATACCAGAAGCAGGGGGGGCTGATACATTGAC GCCTATGACAATGGTTGCAAATTTGGTAGATGGATATCTTGCTGAAGTGGCTTCAGATGCTAATTTGAGCTTGACTCAGT TTCAGGCACTTGGTGTTGCAATTCCAGATTATGCTAGGCCACTTGATGACGGTATATACCACGCAATAGATATATACCTT AAGGTTAGATCATTTTGGATACCTTGTCTACCCTCAAGAATCTTGTTCATATATGATATCAACAAACAAACAAACAAATA A
Protein sequence (LotjaGi6g1v0313100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILMQFPLLSRSGLLKKLIAECSDGSSCVLQLHDIPGGSITFELIAKFCYGIKIEVTALNVVPLRCSAEYLQMTESYSEG NLIRLTESFLNEVFSNWPDSIKVLETCEKVLPFAEDLRIVSRCIDSVAMKACSDPELLNWPVTRRNSNENNSAESVLWNG ISSERNLGDDWWYYDVSLLSLPLFKRLISSVESKGMKSESVAACLIYYLRRFLPLMHRQSSFTDTSHATIPTTSDADQRA VLEEIVELIPNKRGVTSSRNLFRLLRTAMILQASPSCRENLEKRVGAQLDQVAGVDLLIPNRVYSVETIYDVDCVQRIVD HFMSIYQPGSLSASPLIPEAGGADTLTPMTMVANLVDGYLAEVASDANLSLTQFQALGVAIPDYARPLDDGIYHAIDIYL KVRSFWIPCLPSRILFIYDINKQTNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 3 | 84 | 82 | 1.00369E-32 | – | |
| PANTHER | 3 | 405 | 403 | 1.7E-193 | – | |
| PANTHER | 3 | 405 | 403 | 1.7E-193 | ||
| SUPERFAMILY | 6 | 90 | 85 | 3.69E-8 | ||
| ProSiteProfiles | 170 | 426 | 257 | 63.779 | ||
| Pfam | 170 | 403 | 234 | 3.2E-73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0313100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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