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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011333
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 314 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 5.495s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001959.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Cicer arietinum] gi|502134553|ref|XP_004502161.1| chr0 596128 600991 -
2 domain predictions
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Lj0g3v0065449.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356560627|ref|XP_003548592.1| chr0 22759327 22759643 +
2 domain predictions
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Lj0g3v0066449.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Glycine max] gi|356530225|ref|XP_003533683.1| chr0 23396595 23399603 +
2 domain predictions
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Lj0g3v0066449.2
n.a. PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Glycine max] gi|356530225|ref|XP_003533683.1| chr0 23396595 23399603 +
2 domain predictions
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Lj0g3v0079709.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 30805828 30806358 -
2 domain predictions
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Lj0g3v0089599.2
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356566016|ref|XP_003551231.1| chr0 36791674 36796392 -
2 domain predictions
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Lj0g3v0089739.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g04740-like, partial [Glycine max] gi|356577448|ref|XP_003556837.1| chr0 36879968 36882619 +
2 domain predictions
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Lj0g3v0106769.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr0 45970729 45971439 -
2 domain predictions
 –
Lj0g3v0110849.1
n.a. BTB/POZ domain-containing protein [Medicago truncatula] gi|357450437|ref|XP_003595495.1| chr0 48108795 48111696 -
2 domain predictions
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Lj0g3v0122939.1
n.a. POZ/BTB containin G-protein 1 isoform 4 [Theobroma cacao] gi|508703912|gb|EOX95808.1| chr0 54982499 54983466 -
2 domain predictions
 –
Lj0g3v0122939.2
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356506034|ref|XP_003521793.1| chr0 54982499 54983466 -
2 domain predictions
 –
Lj0g3v0127359.1
n.a. NPH3 family protein [Phaseolus vulgaris] gi|319428669|gb|ADV56692.1| chr0 57413348 57417984 -
2 domain predictions
 –
Lj0g3v0135349.1
n.a. POZ/BTB containin G-protein 1 isoform 5 [Theobroma cacao] gi|508703913|gb|EOX95809.1| chr0 62164530 62166775 -
2 domain predictions
 –
Lj0g3v0188989.1
n.a. POZ/BTB containin G-protein 1 isoform 1 [Theobroma cacao] gi|508703909|gb|EOX95805.1| chr0 92398759 92399808 +
2 domain predictions
 –
Lj0g3v0188989.2
n.a. BTB domain protein [Nicotiana benthamiana] gi|320526044|gb|ADW41580.1| chr0 92399116 92399808 +
2 domain predictions
 –
Lj0g3v0193919.2
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356506034|ref|XP_003521793.1| chr0 94645485 94647803 +
2 domain predictions
 –
Lj0g3v0241599.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Glycine max] gi|356566311|ref|XP_003551376.1| chr0 125332028 125334395 -
2 domain predictions
 –
Lj0g3v0243869.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 126564978 126566851 -
2 domain predictions
 –
Lj0g3v0243869.2
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera] gi|225437008|ref|XP_002272541.1| chr0 126564978 126565853 -
2 domain predictions
 –
Lj0g3v0254189.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Glycine max] gi|356504266|ref|XP_003520918.1| chr0 131991039 131995050 +
2 domain predictions
 –
Lj0g3v0261809.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 135672175 135672669 +
2 domain predictions
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Lj0g3v0262619.1
n.a. Root phototropism protein [Medicago truncatula] gi|357491537|ref|XP_003616056.1| chr0 136180263 136181378 +
2 domain predictions
 –
Lj0g3v0266519.1
n.a. Root phototropism protein [Medicago truncatula] gi|357443211|ref|XP_003591883.1| chr0 138035978 138039468 +
2 domain predictions
 –
Lj0g3v0273719.1
n.a. PREDICTED: ethylene-responsive transcription factor 5-like [Glycine max] gi|356541103|ref|XP_003539022.1| chr0 141882229 141884018 +
2 domain predictions
 –
Lj0g3v0276389.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356573187|ref|XP_003554745.1| chr0 143418008 143418952 -
2 domain predictions
 –
Lj0g3v0288739.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356506034|ref|XP_003521793.1| chr0 150021289 150021753 +
2 domain predictions
 –
Lj0g3v0288819.1
n.a. Root phototropism protein [Medicago truncatula] gi|357443211|ref|XP_003591883.1| chr0 150074146 150077636 -
2 domain predictions
 –
Lj0g3v0290919.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g21780-like isoform X2 [Cicer arietinum] gi|502124004|ref|XP_004498343.1| chr0 151007486 151010334 +
2 domain predictions
 –
Lj0g3v0301399.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Glycine max] gi|356539895|ref|XP_003538428.1| chr0 156633652 156635560 +
2 domain predictions
 –
Lj0g3v0301399.2
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cicer arietinum] gi|502137764|ref|XP_004503177.1| chr0 156633652 156635560 +
2 domain predictions
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Lj0g3v0303919.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 158324905 158325785 +
2 domain predictions
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Lj0g3v0304119.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] gi|356504912|ref|XP_003521238.1| chr0 158413103 158417180 -
2 domain predictions
 –
Lj0g3v0326939.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 170898222 170899504 +
2 domain predictions
 –
Lj0g3v0343689.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180194569 180204934 -
2 domain predictions
 –
Lj0g3v0343689.2
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180197934 180204934 -
2 domain predictions
 –
Lj0g3v0343689.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180200209 180204251 -
2 domain predictions
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Lj0g3v0349889.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 183814823 183815317 +
2 domain predictions
 –
Lj0g3v0363179.2
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr0 191546604 191549479 +
2 domain predictions
 –
Lj0g3v0363739.1
n.a. Speckle-type POZ protein-like protein [Medicago truncatula] gi|357461485|ref|XP_003601024.1| chr0 191931321 191935308 +
2 domain predictions
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Lj1g3v0053660.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628227 -
2 domain predictions
 –
Lj1g3v0053660.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628268 -
2 domain predictions
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Lj1g3v0785810.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] gi|356568248|ref|XP_003552325.1| chr1 10280308 10283728 +
2 domain predictions
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Lj1g3v0785810.2
n.a. PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] gi|356568248|ref|XP_003552325.1| chr1 10280308 10283728 +
2 domain predictions
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Lj1g3v0861780.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g21780-like [Cicer arietinum] gi|502135909|ref|XP_004502495.1| chr1 11024217 11025524 -
2 domain predictions
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Lj1g3v0898900.1
n.a. PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Cicer arietinum] gi|502136060|ref|XP_004502546.1| chr1 11459842 11463668 +
2 domain predictions
 –
Lj1g3v2372430.1
n.a. PREDICTED: ethylene-overproduction protein 1-like [Cicer arietinum] gi|502104260|ref|XP_004492482.1| chr1 27917884 27924145 +
2 domain predictions
 –
Lj1g3v2536090.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] gi|356568248|ref|XP_003552325.1| chr1 29179377 29182879 -
2 domain predictions
 –
Lj1g3v2671420.2
n.a. PREDICTED: SKP1-like protein 21-like [Glycine max] gi|356531993|ref|XP_003534559.1| chr1 31109626 31121766 -
2 domain predictions
 –
Lj1g3v2671420.4
n.a. SKP1 component [Medicago truncatula] gi|124359727|gb|ABD32817.2| chr1 31115190 31121766 -
2 domain predictions
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Lj1g3v3979310.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] gi|356571773|ref|XP_003554047.1| chr1 47258558 47264774 +
2 domain predictions
 –