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LotjaGi6g1v0329400.5

Overview

Field Value
Gene ID LotjaGi6g1v0329400
Transcript ID LotjaGi6g1v0329400.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Leucine-rich repeat protein kinase family protein; TAIR: AT1G28340.1 receptor like protein 4; Swiss-Prot: sp|C0LGG4|Y1518_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51860; TrEMBL-Plants: tr|K7M1H9|K7M1H9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0329400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64428539..64430339) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAAACAGTAAGAGCTAGTTCCCACTCCCTGGCTGTTTTTTCTGGTGGATTTTAGTGTCAACGAAACGAGCGCGATTG CTTGCACATTCCAAATGATAGGATTTCCATAAATTTGAGATGTTTTTGTTTTTTGAAACTTTATTCACAATTGACTTGGA CCAAAATTTATGCAACTTTGTATTCATTGCAGGGCCATTTGCTATGCGTATAAACTGTGGGGCTCGTCAAAATGTTCAAA CAAAACCAACCACAACCCTTTGGTATAAAGACTTTGGATATACAGGCGGCATCCCTGCCAACGCGTCTACAACAAGTTAC ATCGCCCCTCCTCTCAAAACTCTTCGCTATTTCCCCTTGTCTGGAGGTCCTTCAAATTGCTACAACATTCATCAAGTGCC AAAGGGGCACTACTCAGTCAGGGTCTTTTTTGGACTTGTTGCTCATGCTAGAACTACTGATGAACCTCTATTCGACATCT CAATTCAAGGCACTCAAATATATTCCTTGAAATCAGGTTGGACTAATCAGGATGATCAAGCATTTACTGAAGCCCAAGTG TTTCTTATGGATCGTTCTGTCTCAATCTGTTTTCATAGCACTGGTCATGGAGATCCAGCAATTCTTTCAATCGAGATTCT TCAAATCGATGACAAAGCTTATTATTCTGGATCACAGTGGAGCCAAGGGACAATACTTAGAACAGTTAAAAGGCTGAGTT GTGGTTTTGGGCAGTCAAAATTTGGTGAGGATTATGGTGCATATCCTCTAGGAGGGGACAGATTTTGGCAGCATATTAAG ACTTTTGATCAGGGCTCTGATCGACCTAGATCTGTTGAAACTAGAATAAAAAAGACTTCGCTTGCACCAAACTTCTATCC AGAAACTCTTTATCGATCAGCACTTATTAGTACTAGTAGCCAGCCTGATTTAACATATACATTGGATGTGGATCCCAGTA AAAACTATTCTATTTGGTTACATTTTGCTGAGATTGATAATTCAGTGACTTCCACAGGACAAAGGGTCTTCGATATTATG ATAAATGGTGATGTTGCTTTTAAAGATGTTGACATTGTGGAATTGAGTGGGGATCGTTATACTGCCCTTGTGCTTAATAA AACTGTTACTGTTAATGGGAGGACATTGACAATAACTTTGAGGCCGAAAGAAGGAAGTCTTGCCATAATCAATGCAATAG AGATATTGGAAGTTATAATGGCTGAGTCAAAAACTTTATCAGATGAAGGTACATATGCCAACTCCTAATTTTGTTTTTGG AGTACACCCTTTGACCTGTTAACACACCTCAAGATAATCTAATTGGGGTCTGTGGCTCATTCTAAATACAAATTAAATTG GTTTCGACCAAATTATGTGTTATTAGCCTGTTATTTGCTACTTTTAAATGCAGTGTCGTACTTCTTTGGTCTCTGTCTTG TCATATTGTCTTTAGCGGATTGCTCTTGTTGTTCTTTCTTCCTCTTCCTTTCAGCGATGACATTCAAGCTTAATAGTATT GATTGGTTACTCTATTTTTACTTTTACGTCTTCTCTAATTTTATATACTATTAGTGGTATCAAATGTGATTTCCTGTAAT CCAAATGCATGTTAATTTTTGCTAGTTAATCGTTGTTCTTTTACTCTAGTTAAGGCCTTACAAACATTGAAGAAGGCTTT GGGGCTTCCTCCTAGGTTTGGGTGGAATGGTGATCCTTGTGTTCCTCAACAACATCCATGGACTGGAGCAGATTGTCAAT TAGACAAAAGTAGTGGCAGTTGGGTCATTGATGGACTGTAA
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CDS sequence (LotjaGi6g1v0329400.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTTGTTTTTTGAAACTTTATTCACAATTGACTTGGACCAAAATTTATGCAACTTTGTATTCATTGCAGGGCCATT TGCTATGCGTATAAACTGTGGGGCTCGTCAAAATGTTCAAACAAAACCAACCACAACCCTTTGGTATAAAGACTTTGGAT ATACAGGCGGCATCCCTGCCAACGCGTCTACAACAAGTTACATCGCCCCTCCTCTCAAAACTCTTCGCTATTTCCCCTTG TCTGGAGGTCCTTCAAATTGCTACAACATTCATCAAGTGCCAAAGGGGCACTACTCAGTCAGGGTCTTTTTTGGACTTGT TGCTCATGCTAGAACTACTGATGAACCTCTATTCGACATCTCAATTCAAGGCACTCAAATATATTCCTTGAAATCAGGTT GGACTAATCAGGATGATCAAGCATTTACTGAAGCCCAAGTGTTTCTTATGGATCGTTCTGTCTCAATCTGTTTTCATAGC ACTGGTCATGGAGATCCAGCAATTCTTTCAATCGAGATTCTTCAAATCGATGACAAAGCTTATTATTCTGGATCACAGTG GAGCCAAGGGACAATACTTAGAACAGTTAAAAGGCTGAGTTGTGGTTTTGGGCAGTCAAAATTTGGTGAGGATTATGGTG CATATCCTCTAGGAGGGGACAGATTTTGGCAGCATATTAAGACTTTTGATCAGGGCTCTGATCGACCTAGATCTGTTGAA ACTAGAATAAAAAAGACTTCGCTTGCACCAAACTTCTATCCAGAAACTCTTTATCGATCAGCACTTATTAGTACTAGTAG CCAGCCTGATTTAACATATACATTGGATGTGGATCCCAGTAAAAACTATTCTATTTGGTTACATTTTGCTGAGATTGATA ATTCAGTGACTTCCACAGGACAAAGGGTCTTCGATATTATGATAAATGGTGATGTTGCTTTTAAAGATGTTGACATTGTG GAATTGAGTGGGGATCGTTATACTGCCCTTGTGCTTAATAAAACTGTTACTGTTAATGGGAGGACATTGACAATAACTTT GAGGCCGAAAGAAGGAAGTCTTGCCATAATCAATGCAATAGAGATATTGGAAGTTATAATGGCTGAGTCAAAAACTTTAT CAGATGAAGTTAAGGCCTTACAAACATTGAAGAAGGCTTTGGGGCTTCCTCCTAGGTTTGGGTGGAATGGTGATCCTTGT GTTCCTCAACAACATCCATGGACTGGAGCAGATTGTCAATTAGACAAAAGTAGTGGCAGTTGGGTCATTGATGGACTGTA A
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Protein sequence (LotjaGi6g1v0329400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFLFFETLFTIDLDQNLCNFVFIAGPFAMRINCGARQNVQTKPTTTLWYKDFGYTGGIPANASTTSYIAPPLKTLRYFPL SGGPSNCYNIHQVPKGHYSVRVFFGLVAHARTTDEPLFDISIQGTQIYSLKSGWTNQDDQAFTEAQVFLMDRSVSICFHS TGHGDPAILSIEILQIDDKAYYSGSQWSQGTILRTVKRLSCGFGQSKFGEDYGAYPLGGDRFWQHIKTFDQGSDRPRSVE TRIKKTSLAPNFYPETLYRSALISTSSQPDLTYTLDVDPSKNYSIWLHFAEIDNSVTSTGQRVFDIMINGDVAFKDVDIV ELSGDRYTALVLNKTVTVNGRTLTITLRPKEGSLAIINAIEILEVIMAESKTLSDEVKALQTLKKALGLPPRFGWNGDPC VPQQHPWTGADCQLDKSSGSWVIDGL
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46662
19 426 408 1.8E-217 –
PANTHER
PTHR46662:SF12
19 426 408 1.8E-217 –
Pfam
PF12819
31 365 335 4.5E-67
IPR024788
Gene3D
G3DSA:2.60.120.430
222 367 146 1.3E-17 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0329400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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