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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0346900 |
| Transcript ID | LotjaGi6g1v0346900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|I3T3Q3|I3T3Q3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0346900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65962497..65965455) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGTTTAAATTTTTTTTTTCTTTTTTTGCTATTATTTGGTATTCAAATCAACATCCATCTTACCCTTCTATTCAATT TGGTGATTCTGCTTCTTCTTTTTTGGGCCAGTTTTCTGTCTCTGAACCAGGGGTCACTCATGTATAGTGAGGTGCAGGCT ATATCGGCTCACATGCATGCTTCCTTTACGGCTCCTGAAGGAGTCTTATCGAGTATGTCTCTTCATATTATTGAAAACTT CTCTGACAAAATCAAATGCACGGCACTCATCAGTCTAGTCTGACATTTTCTCCCTTGCAGGATAATCTGTCACGAGGAAA TTTAGGTGCCGTCAAGGTTCTTCAAAACCTATTTCCAGAACCTGGAAGGCTTCAATTTTACATGCTGACTTGGGAGATTC GAAATCTGTATCCTTGTAATATTTCCTTGTTGCCTGAAATAATTTGGTGTTGAATGTTAACTTTGATTGAAGCATAGTGT TAGAGAATGCCCCAGAGAAATTGTGTACCGTGTACTTGACTGGTTATCAGGTTAATAAAATCTTTTCAGAGAATAAATTT GTTGCTGTGATGCACTTCACTGCTGTTGCATATGTGGGAGAAAGCACACTTTACCCTCTTAAGTAAGTACTTGTAACTTT TATTGGGGACAATATTTCCAGTTTAACAATTTGTGCGAAGTAGTAGTATAGAATTTGTGTGCATTTCTAATTTCCTCCAT AAGTAGCATGAACAACAGATTGGCTTTTTAGACACAAATTGAAATTCTCAATTTTATTATGAATTCTCTTTCAAGGTTTG TTTAACTAAGGTCTTGGTTTTGTGGATTCAATATGCTCTGCCTTTGATAATATACCTCTCTTAGTTAAAACTTAAAAGGT TGACATTCCTATAATTACCTTCATAGTGGTTTACTCAAAAGTTATCCTAGGCCCAAGGAAGTTACAAATAAAAAAAGTAC ATGATTGTGAAGTGAATGTTAAGGTTTCCAAATCAAAATTGATTCTAAATCTAGATTATTTGGGATAAAGACCTAAATAT GTTTTATGGGATTATGTCTATATGTTTTCTCTATTATGACTTATTTTAATTAGATTTAGCTGAGATGGATCAGTGTTAAA ATTCATCCATTTCAATTCAACTTTTTTATGTTGTATAACTTGTTTGTCAGGGGTATTATCTCAATATTACATCAAATACC TTGTTGGTATTGGAGTCTATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGGGGAACC GGAAAAGATGCCCATTACAGAAGAAACGGAACAGGTATGAAATATTCTAAGTGTGATTGAATTGTGAACTATAGTTGAGA ACTTTCGTTTTTAACTACAGTCTATGTCTAATGTTTTCTTGGTTACTTTAATGAACATTGAAACCTATGTTAAATTGATA TTCTTCAATTTCAGAAGCCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATCCTTGATTTTTCTAAA AATTCTAAGATGGCCGTAATGATTCTGAGGTTTGTACTTTGCATTTAAGTTATTAGTGATTTCTCCAATGTTTCAAATAG CTTTTTTTTATGTCTTATTCATGTGCCCTTTGTTTCTTAAGTTATTAGTCAACATATCTTACATGTAAGGAAACCTTGTA ACAAGTGTTCCACGGTTTAAGTCAAATGCATTTTGTGATTTTTCTTTTCTTTGCTTTTTGGCATATAGATGTTATGAATC CGTATTATTAATGCAGACTTCTCATAATCTGCTACTTTATGATATATGACATTTTCTTCTGGGAAGGTTTGATTTGAAGG TGACCTAGACATGCACCTTCATGTGACAAAAATCTTTATTGCCATGTACTGATAGGAAAAAAGTATCAGTACTTAATTTT GGATTTCATAACATAAATAATTGTTAATTTCAAGTTAATAATTCCTACTATCCTATGGTTTGTGACTATTGATAACTTTT CTTTGGGGAACATTCAGATATTTCAATGTGATTGGATCAGACCCTGAGGGCAGATTAGGTGAAGCACCGAGACCTGAACT TCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGGTATTACATCTGGCTTAAAGGTATCCTGCTATT ATAATTTTTACTTTATTCTTGTGCTGTTTTATTTTATAGAGAAGCTTAAGCCATCTGATTTTCCATTATGTAGAATTCTT CTATATATTATAATTTATTTCACTCTAGTCTGCTTTCACAGCCAACTTGAAAACCAGCCAAAAAAATTGTTTCTGAACTA ATATGCCGGTATATAATGAATGTGTACTCATTGTATATGTTTCCACGATTTGCAGGTTAAAGGAACAGACTATAACACCC CTGATGGAACATGCGTTCGAGATTATATTGATGTAACTGACCTGGTTGATGCTCACGTCAAAGCTCTTGAAAAGGCACAA CCTGGTCAAGTTGGGATCTACAATGTTGGCACTGGAAAAGGTAAGTTTTACAATTTGAATATAGCATACTTGGACGGTTG GACCACCTTCTCTTTCACCAGAATCAATTCTGAAACCCGAAAGCTACTCACAGATTGATTCTGGCTTCAGAGTCAATTGT AGAAGTGTTTCCAAACTTGGACATAGTCTATCCAGATGTTTCATAGTTATCTCAAAAGTTCTCATAGTGGGGTTGTTTCT CAGGAAGATCAGTGAAGGAGTTTGTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCAATCCCCGC AGGCCCGGTGATTACGCTGAGGTTTATTGCTACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTGA TCTTCAGAAGAGCATACAAGTTGCATGGAAATGGCAGAAATCGCGTCCTGGTGGTTATGGAGTATCATCTGCAATCTGA
CDS sequence (LotjaGi6g1v0346900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGGGGAACCGGAAAAGATGCCCATTAC AGAAGAAACGGAACAGAAGCCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATCCTTGATTTTTCTA AAAATTCTAAGATGGCCGTAATGATTCTGAGATATTTCAATGTGATTGGATCAGACCCTGAGGGCAGATTAGGTGAAGCA CCGAGACCTGAACTTCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGGTATTACATCTGGCTTAAA GGTTAAAGGAACAGACTATAACACCCCTGATGGAACATGCGTTCGAGATTATATTGATGTAACTGACCTGGTTGATGCTC ACGTCAAAGCTCTTGAAAAGGCACAACCTGGTCAAGTTGGGATCTACAATGTTGGCACTGGAAAAGGAAGATCAGTGAAG GAGTTTGTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCAATCCCCGCAGGCCCGGTGATTACGC TGAGGTTTATTGCTACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTGATCTTCAGAAGAGCATAC AAGTTGCATGGAAATGGCAGAAATCGCGTCCTGGTGGTTATGGAGTATCATCTGCAATCTGA
Protein sequence (LotjaGi6g1v0346900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKYGVKTLIYSSTCATYGEPEKMPITEETEQKPINPYGKAKKMAEDIILDFSKNSKMAVMILRYFNVIGSDPEGRLGEA PRPELREHGRISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDVTDLVDAHVKALEKAQPGQVGIYNVGTGKGRSVK EFVDACKKATGVNIKVDFNPRRPGDYAEVYCYPAKIRRELNWTAQHTDLQKSIQVAWKWQKSRPGGYGVSSAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 231 | 231 | 8.4E-149 | – | |
| PANTHER | 1 | 231 | 231 | 8.4E-149 | – | |
| Gene3D | 1 | 74 | 74 | 3.4E-19 | – | |
| SUPERFAMILY | 1 | 225 | 225 | 4.51E-51 | ||
| Pfam | 2 | 152 | 151 | 3.5E-23 | ||
| Gene3D | 75 | 146 | 72 | 1.1E-12 | – | |
| Gene3D | 147 | 231 | 85 | 1.0E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi6g1v0346900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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