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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0347700 |
Transcript ID | LotjaGi6g1v0347700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc transport protein zntB; TAIR: AT2G04305.1 Magnesium transporter CorA-like family protein; Swiss-Prot: sp|Q6D5P8|ZNTB_PECAS Zinc transport protein ZntB; TrEMBL-Plants: tr|A0A151S108|A0A151S108_CAJCA Zinc transport protein zntB; Found in the gene: LotjaGi6g1v0347700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66041568..66045980) extracted from Lotus japonicus Gifu genome v1.2.
TAACAGAGAAGAGAGTTTTGGAAGTGGGACTTTCGAATTCGGATGGGATGAGATTAATCAGATTATAGATCATAGAATTT GAAAGGCAAGTTTCATAGAAATTAAATAACACTTCACTTATTATTATTTTATTTTTATCACACGCACAAATTTTCCCCTT CCCTTTGAACCTTTCAATATAGTTTCATCGCTTCACCCGAATTCAACAAGGTAATGCACTTCTTCGTCTTCACTTCTTTT TTGATTCATAATTGTATTACTTGCTGGCCAGAGTAGAATTTGATTTGAGCCACGTCAAACTTTGAAGCAGGGTTTTGAAT TTGATTTGATTCATAGTGCACTTGATTGGGTTTGTTACAACATTTCAGTTATTTTGGTACAATTCATATTGGTTTGTTGA CCTTGGTTTTGAGATTGCAATTTGCAAGTAATATTAAATCAATAGCATATAGGCTGTTTTAAAGTATATTAGATTTGAAA TGCCAAGTTTATGAGATTAAGAAGTTAGAGTTTCTGGGTGAAGTTGTTTGGTATCATTTTTTGGTTTATTAGTTAGTTGG AAGGCTATTTTGATTTTGGGGTAGCTGGTGAAAGTTATGGAACTAGCTCAGCGGAGAGTATTGGAGAATGGCGAGGCGGA GGAGATGGAAGTTGAGATTCCGGCTGAAGAGCATCGAATCTACCATTCCCATCCTGCAAGCTTCGTCAAGAAGAGGGCTT ATGTATTTGATGGTTTAGGGAATTTTTATAATAAGGATTGGGATCTGGCATACCTTTATAAAAAAGACGAAAGGGAAACA GTTGGAGTTGAAGGCCGAGAGAATGAGTTTTCTTGGTACCATGTAGAACTCCCTAAAGGAAATCAGAAGTTGTCGCAATC CGCGCAGGACTTGATCGGTGTTCTCTGCCCGCCGTTGAAGCTACAAGATATTCTCTCGCTTGTTAGTAATGGACCCTTTT GTGCATATGTAGATGGGGCGCTTGTCTTCCGGGTTAATTCACCAGGACCTCCTTCTAGTGACTTTACATTTAGAATTGCT GCTAGAGTTACGGAGAATTCGGTAATTACTGTGTCTTTGGGGCGTGTTCCCCGGCTAGGTTTCTCACGCATGGGCGAATC TCTACTTTCGGAAATTCCTAGTGTTGAAAGCTCTTCTAATTTTAGAGGTCAGCAGAAGGAAAAAAGTGGGACTGTGATTA AGGAGCATGTTCTTGAATTCTTGTTAACTATGAACCACTCCGAGGAAGCTGACAATCCAGTGCCTAGATCTGTTCCAAAA CTTGTAGTTCACATAATTGATACACATGTAGATCAGCTTCAAGATATTGTGACCAAGCTTGAGATAGAGTTGGATTCTGT GGAGCTTGACCTGGATAAAGGTAATTCCCATTATACACTCCTTGATCCCCTGTAGTCTCATTCCTTAACAATGGCATACA CAATCATAATTTCATTTGTTTGTACCATTCATAGTTTAATGGCTTTCTGTATATATTTATCCTCAAATTTAGATCTCTTT ATATGTCAAACCTTACTAATTCATGCTATTCTTAATTACTGCAAGTTTGCCTTAGTTTCTAGTAAATTGACTTCAAAAAA ATAGTGATAGAAGTTAGATGTACTTTGTGGTCTTTCATTTGTTGGAGGCTGATTGGAACTGGACCAGACTAAGAAGAAAG AAACTGAAATTCTATTGAGTTCTTCCTGGATTCCCTTTGCTCCAATTGGTGAAGAGAACTAGCTCAAATTACTATTACAG AAGAAAGTAGAAACTGAACTGAAGTAATATACCTGGCTTTTGAGAGGCCAATCCTCTCCCAAATCTGTATACAACCGAAT GAATGACCCCCTCCCTGAACTAACTGTCTATTTATTAACATGCATTTTGACTCTAGCTAAATTTTTTGATTGGTTCACTT CATATATTTTAACTCTAGCTAAATTTTTTGATTGGTAGTTCAATATTTGTGCCTTTAAATGTTTACCACTAATATGAAAT GATGAAGGCCTTTTGATTTGGTGGAACCTAAAGCTTATCTTCAGAAAAATATGGTCATATATACTTAAATTTTATTTCAT CTGAGTGGCTTTTATGTATAAACTGAAATTTCTGTTTCCAACTTGGTTCTGTTCAATATGCCTATACACTTGTTCTTTGA TTGCAATATTTAGAATTGTTTTATGGAATTAAATTAAGGAACAACCAATCTGCTTGAGTGTAGGTGGTTATGCTCTGAAG AAACAAATGCTAGATGACAGAAGATTCCCCAAACTTCACATTAATTTGCAGCGTCTCCTGCAGGTGATACTCTACTCATT TTATGCTTTCATTCAGCTTTAATTTATAGACCCTTGTGAGGAGATACAAAAGGCATTAAGATGTAGTATAAATATTTTTT ACTAGAGAAATGCTAGTTACACAGTCTCTAGTACACTTTTTTCACACACTCTTTCTTATTGGTCCAAATTCATGTGTTCT ACTAAATAGGGATTGTAACCCACCAAACCAAGAGTCAGACCCTTATGGTTCAATGGATCTCATGTGTTTGAACCAATGAG AAAAAGCGTGTTAGTTGTAAGAGCATGTTAGAGAATGTATAGAAAACTCATTACATTAGTGATTCATAAATGGTTCAACA TTATAGCTATGCAATCAAGCATAAGGGTTGTGGGTCTCATCAACATAGTATATACAAGGTTTTAGTGTTTGCCATTTTCC TTTCAGCACAGATCTGACAGCTTACAAAAAATCGTTTTAAACAAAAAAGAAGACGGCATAATGGAAGCATAGTTATTATT GGAAAATGATTTGTGTTAGATGGAAAAATTAGCAGGGAAAGAAAATAATGTCAGTCTGAATACTCAAATTACAGTAACAA AGAATGTTACTGTCATGAATATGGTGTCACAGCCTCTATGACTAAGAGGTCTGGAGTTCATTCCTTGTTGCCTCCCTCAT TTTCTAATAAAAAAGTAGAATTTCACGCACAAAGGTAGGTGGGCTGTGCATTATCCACACAAGAGCCATTAGGTGGATGA TGAAGTTTGCACCTCCATGGCTGACTAACAAATTAAGGGCAGTGGACTCTTGTGTAAGGGGGAGTAATGTGATAGAAATA TAATATAAAACTGTGCACTTGTCTTTACTGTTTCCCATCTTATTTGTTCTCATCTTCAAATCACACTGTATGGATTATAC ACTTCCGTTTGGTTTGAAACCTTACCACAATTGATTATATTCAGGTGATTGGTCATGGGGAACAAGTATATCTTCGTGTC AAAGAAAAATGCTCTTCGAGAAGATGGTTTCCAAATGAAGACATTAACACCCTTGATGAACTAATTGGAAGGTTAAGGAG GATGAAGGAGAATGTAGGGTTTATAGTAAATCGTGTCACAGCAATTCAGGCCGGTCTTGATAGCTGGCAGTCAGAGCAAA TTAACAGGAAACTGTACTATCTTTCATTCCTTTCAATAATATTCCTCCCTTTGTCCATCATCACAGGAGGTTAGCAATCT GATTCTTTATGAACTTTAATTATCCACATCCGATGGCAATACTGTTTGGTTTTGATTCTTAGTCTTTCATTGCAGTCTTT GGCATGAATGTTGGAGGAGTTCCATGGACAGGTCAAAATGCCCCAGCACTGAAGGATGGTTTTCGGAACGTCATGTTTGT CTGCGTTGCTATGGTACTTCTTGTACTGCTCTGTTTCATTTTCCCAGCTCTTTATTCCCATGTAGCTGCTGCATGGCGAA CAAAGAGAGTTCTGGGAAGAAACTGGTCATTCAACAAGAAGTCATTGCTCAGGAGATCATTAAGGACAGAAGATTCACAG AGAGGGGGCTACCTTCGGATTTAATGGTGACAGTGTCTATTTTATTTCATTGTGCCATTTCATTTTATAAGTGAGTCATT GTACTACTCTGCCATGATAGCATGTTTGGATCAACTTCTCTTTTCTCCGAATCAATTCTGGTATCTAGAAGCTACTCACA GAAGCTTCTCTCCAGAATTGATTTTGGCTTTAGAATCAATTGTAGAATGACTTCCAAACATGCATCCATCACTTCCTTCA GTTTTCTAGAATGTCTCACTTGCAAGCAATTTTGATCAGCTGGTTTTCAATGGCTGGTTAAGGAGAAATGAATAACCTGA TATTAGTTTTCAGTACACACGCACACTTGAAAGCCTAAATGGAATCCTCTATGAAGGGTTGATTCTCTGGTAGAGTAAGA TGGAGATTGTGATCAAGGCAAGCTCATCGTTTATTCTTTCATTTTTTTATTTCCTCCTTGTGAAGGGGCTATGTGGACTC ATCTCTTCATTCATTTTTTTTGGCATTTATGGCAACATTTTTAACCTGTACAGTGTACTTCGTTTGGTTAACTGCAGATT CTCCTCTCAGATT
CDS sequence (LotjaGi6g1v0347700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTAGCTCAGCGGAGAGTATTGGAGAATGGCGAGGCGGAGGAGATGGAAGTTGAGATTCCGGCTGAAGAGCATCG AATCTACCATTCCCATCCTGCAAGCTTCGTCAAGAAGAGGGCTTATGTATTTGATGGTTTAGGGAATTTTTATAATAAGG ATTGGGATCTGGCATACCTTTATAAAAAAGACGAAAGGGAAACAGTTGGAGTTGAAGGCCGAGAGAATGAGTTTTCTTGG TACCATGTAGAACTCCCTAAAGGAAATCAGAAGTTGTCGCAATCCGCGCAGGACTTGATCGGTGTTCTCTGCCCGCCGTT GAAGCTACAAGATATTCTCTCGCTTGTTAGTAATGGACCCTTTTGTGCATATGTAGATGGGGCGCTTGTCTTCCGGGTTA ATTCACCAGGACCTCCTTCTAGTGACTTTACATTTAGAATTGCTGCTAGAGTTACGGAGAATTCGGTAATTACTGTGTCT TTGGGGCGTGTTCCCCGGCTAGGTTTCTCACGCATGGGCGAATCTCTACTTTCGGAAATTCCTAGTGTTGAAAGCTCTTC TAATTTTAGAGGTCAGCAGAAGGAAAAAAGTGGGACTGTGATTAAGGAGCATGTTCTTGAATTCTTGTTAACTATGAACC ACTCCGAGGAAGCTGACAATCCAGTGCCTAGATCTGTTCCAAAACTTGTAGTTCACATAATTGATACACATGTAGATCAG CTTCAAGATATTGTGACCAAGCTTGAGATAGAGTTGGATTCTGTGGAGCTTGACCTGGATAAAGGTGGTTATGCTCTGAA GAAACAAATGCTAGATGACAGAAGATTCCCCAAACTTCACATTAATTTGCAGCGTCTCCTGCAGGTGATTGGTCATGGGG AACAAGTATATCTTCGTGTCAAAGAAAAATGCTCTTCGAGAAGATGGTTTCCAAATGAAGACATTAACACCCTTGATGAA CTAATTGGAAGGTTAAGGAGGATGAAGGAGAATGTAGGGTTTATAGTAAATCGTGTCACAGCAATTCAGGCCGGTCTTGA TAGCTGGCAGTCAGAGCAAATTAACAGGAAACTGTACTATCTTTCATTCCTTTCAATAATATTCCTCCCTTTGTCCATCA TCACAGGAGTCTTTGGCATGAATGTTGGAGGAGTTCCATGGACAGGTCAAAATGCCCCAGCACTGAAGGATGGTTTTCGG AACGTCATGTTTGTCTGCGTTGCTATGGTACTTCTTGTACTGCTCTGTTTCATTTTCCCAGCTCTTTATTCCCATGTAGC TGCTGCATGGCGAACAAAGAGAGTTCTGGGAAGAAACTGGTCATTCAACAAGAAGTCATTGCTCAGGAGATCATTAAGGA CAGAAGATTCACAGAGAGGGGGCTACCTTCGGATTTAA
Protein sequence (LotjaGi6g1v0347700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELAQRRVLENGEAEEMEVEIPAEEHRIYHSHPASFVKKRAYVFDGLGNFYNKDWDLAYLYKKDERETVGVEGRENEFSW YHVELPKGNQKLSQSAQDLIGVLCPPLKLQDILSLVSNGPFCAYVDGALVFRVNSPGPPSSDFTFRIAARVTENSVITVS LGRVPRLGFSRMGESLLSEIPSVESSSNFRGQQKEKSGTVIKEHVLEFLLTMNHSEEADNPVPRSVPKLVVHIIDTHVDQ LQDIVTKLEIELDSVELDLDKGGYALKKQMLDDRRFPKLHINLQRLLQVIGHGEQVYLRVKEKCSSRRWFPNEDINTLDE LIGRLRRMKENVGFIVNRVTAIQAGLDSWQSEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQNAPALKDGFR NVMFVCVAMVLLVLLCFIFPALYSHVAAAWRTKRVLGRNWSFNKKSLLRRSLRTEDSQRGGYLRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 357 | 357 | - | – | |
PANTHER | 13 | 465 | 453 | 2.0E-244 | – | |
SUPERFAMILY | 61 | 344 | 284 | 7.19E-7 | – | |
Pfam | 218 | 418 | 201 | 2.5E-26 | – | |
Gene3D | 222 | 357 | 136 | 1.7E-6 | – | |
Coils | 238 | 258 | 21 | - | – | |
SUPERFAMILY | 353 | 417 | 65 | 3.27E-12 | – | |
Phobius | 358 | 382 | 25 | - | – | |
TMHMM | 360 | 382 | 23 | - | – | |
Gene3D | 361 | 419 | 59 | 2.4E-6 | – | |
Phobius | 383 | 401 | 19 | - | – | |
Phobius | 402 | 423 | 22 | - | – | |
TMHMM | 402 | 424 | 23 | - | – | |
Phobius | 424 | 465 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0347700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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