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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0350200 |
Transcript ID | LotjaGi6g1v0350200.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G64330.3 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3; TrEMBL-Plants: tr|I1MDZ4|I1MDZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66239579..66242796) extracted from Lotus japonicus Gifu genome v1.2.
GAATATCATATTGTTTTGTACTATTAACTTATCCATTTCATGTCTTGTACTATTGTATTGTCTTGAGAACTCAATCCCTT TTCTTGCAGGTATGTTGCAACCGATGTTCCAAGTGACTTTCTTGTTCAAATTGGAGAAACTAGCTTCCACTTACACAAGG TAGGTAGCTATATTTTGTTCTTGTTTCTGAAAGTTTGAATTTTTGTGCAATGGTTTTATATTAAGAGATGAAGGACTACT CATTTCTTTTTACTGATAAATATTGGGTCTATTTCTCTCCCTTTGTTTTGTTGTGAAAGTATCCTTTGGTATCTCGAAGT GGAAAGCTGAACAGAATCATATATGAATCAAGCATCCCAGATTTGAATAAGATAGTTATGGATGATATCCCTGGTGGACC TGAGGCTTTTGAAATTGCAGCAAAGTTCTGCTATGGAGTTGCTGTTGATTTAACAGCAGGCAACATCTCCGGCCTTAGAT GCGCTGCAGAGTATCTAGAAATGACAGAGGACCTGGAGGAAGGGAATCTCATATTCAAGACAGAAGCATTCCTTAGCTAT GTTGTTTTGTCTTCATGGAGAGACTCCATTGTAGTGTTGAAAAGCTGTGAGAAGCTCTCACCATGGGCGGAGAACCTTCA AATTGTTCGCCGATGCAGCGAGTCCATAGCTTGGAAGGCTTGTGCTAATCCAAAAGGGATAAGGTGGTCCTATACCGGAA GATCCGTAAAACATCCCAGTCCAAAATGGAATGATTTGAAAGACTCAAGCCCAAGTAGGAATCAGCAGGTTCCTCCTGAT TGGTGGTTTGAAGATGCCTCTATTCTCAGGATTGATCACTTTGTTAGAGTTATTACTGCCATTAAGGTAAAGGGCATGAG ATTTGAATTGATTGGTGCTGCAATAATGCATTACGCAACTAAATGGCTACCAGGATTGATTAGCGACACGACAATCCCTG GCGACGAAGCGAGCAACTTCAGTATCAGTAATAGTAGTAGTAGTAGTAGCACCAGCTGGAAAGGTGGACTTCATATGATT GTGTCTGGACCCGGAACTAGAGATGACACCGCTTCAAGTCTTCAAGCTAAAGATCAAAGGATGATTATTGAGAGCCTCAT CAGCATTATTCCACCACAGAAGGACAGTGTCTCATGCAGCTTCCTTCTTAGGCTCCTGAGAATGGCAATCATGTTAAAGG TTGCACCAGCACTAGTTACTGAATTAGAGAAAAGAGTGGGAATGCAATTTGAGCAGGCTACACTGACTGATCTTCTAATT CCTTCTTATGATAAAGGAGAGACTGTGTATGATGTGGATCTTATTCAGAGGCTATTGGAGCATTTTCTTGTACAAGAACT GACTGAAAGTTCTAGTCCAGGCAGAAAGTCCTTTTCTGAAAAAATTGTTGGATGTAACCTTAATGCCAAGGCAAGAGTGG CTAGGCTTGTTGACAGTTATCTCACTGAGGTGTCCAGGGATAGAAACCTTTCCCTCACAAAGTTTCAAGTACTGGCAGAA GCTTTGCCAGAGTCAGCTAGGACCTGTGATGATGGACTCTACAGAGCAATTGATTCCTATCTTAAGGTAATTATTTCCTG TTTCTATGGAAAAACGAAGCAAAAATGTTATTGATCTTGTTTTTAATGTTTTTGAGTTATCTAAGGTTATACTTCATTAT ACTTTGGTAAAACAACATGATGAAATTTGAAATGAAAATTTGGGTTTCATGATAACTTTGCATGCTTATTTATTGTATTC AATATTCATCATAATAAAGGGAAAAGTTGATTGGTGAATCTATTTTCAGTGGCAATACATTTTAGTTATAGGGCTTTTTT ATTCCCCGAATTTCCTGAATCCCACCTTTTTTTTCCATCTCCATTTCACTCTTTTTTCTTTTTCTTTCTATCTTTCTCTC ATTCCTCAATCACATCACCCATCATATCTCTCACAACTATTTTTTTATTTCTTTCTCACTCTGGGTGAAGGTTGAAATTA TGTGCTGATGAAACATTAATGTATCTATTATATCACACATATAAGATCACTAAATATAATATCGATCAATTCCCTAGCAA AATGATTTGTTTCATAGAGAAGGTTAGATTTATATCCATTAGTTTGGCAAAGGGGGAATACAAAAGAGCTTTTGAGATAC TACTAATACTACCATATTTGGTTTCACTGTAAAATGCTCTACAATCACGTCTTTAGCTTCTGATAAATCTCCCTTGAATT TTGTGCAAATCGTGAAACCAAACATGTTATATATGTGTGCTTCACTCATTCTAGAGCAATCAGTAGGAATGTCTAGTGGC TCAGCTTCACTTTCCACATTGATTTGGACTTCTGGATTTTTTTTTATTGTGAAACAAATTAACAGGCACATCCAACACTT TCTGAGCATGAAAGGAAGCGACTCTGCCGTGTAATGGATTGCCAGAAACTCTCCATTGATGCCTGCATGCATGCCGCCCA AAACGAAAGGCTTCCATTAAGAGTGGTTATACAAGTTCTATTCGCTGAGCAGATTAAGATAAGCAATGCACTAGCCACAA GTTCTCTGAAAGATGTTGATTCTCTTACTCAGCCAATGGCTTCAAACAGGAAAACAATTCTTGAAGGGACACCACAATCA TTTCAAGAAGGCTGGTCAGCTTCTAAAAAAGATATCAATTCACTGAAGTTTGAGCTGGAGAGTATGAAAGCTAAGTACTT GGAGCTTCAGAGTGAAATGGAAAGTTTGCAGAAACAATTTGATAAGATGCTAAAGCAGAAGCATACTTCAGCATGGAGCA GTGGGTGGAAGAAACTGAGCAAACTTACAAAGATGACAAATGTGCAAAATCATGATTATTCACCTCAGGTTCCAGCTATA GCAGAACAGAACAGAAGGCCTACTAGAAGGTGGAGAAACTCCATATCCTGATTCCTGGAAGAAGAGAAATTCTCATTTTC TTTGAAACTTATTCTTCTATGTCCCCAGTTTTTTCTATCTAGTTTGGTCATATTTCTCTTTTCTTCTTTTGAGCAGCAGA TGGTGCTTCTGTTCTCTCAGATAACAGTTTATGTATTGTAGCAAACTAGCAATGGTACAAGATTCTAGTTGTAGCTAAAT TGGAATTTGTCACCAAAGTCATATATTTAGAGATGAATTCTACTGTCACTTGAAGCGCAACTAAAAATATGTTTGGTTTT ACGGTGAAATACTCTCGA
CDS sequence (LotjaGi6g1v0350200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATATCCCTGGTGGACCTGAGGCTTTTGAAATTGCAGCAAAGTTCTGCTATGGAGTTGCTGTTGATTTAACAGC AGGCAACATCTCCGGCCTTAGATGCGCTGCAGAGTATCTAGAAATGACAGAGGACCTGGAGGAAGGGAATCTCATATTCA AGACAGAAGCATTCCTTAGCTATGTTGTTTTGTCTTCATGGAGAGACTCCATTGTAGTGTTGAAAAGCTGTGAGAAGCTC TCACCATGGGCGGAGAACCTTCAAATTGTTCGCCGATGCAGCGAGTCCATAGCTTGGAAGGCTTGTGCTAATCCAAAAGG GATAAGGTGGTCCTATACCGGAAGATCCGTAAAACATCCCAGTCCAAAATGGAATGATTTGAAAGACTCAAGCCCAAGTA GGAATCAGCAGGTTCCTCCTGATTGGTGGTTTGAAGATGCCTCTATTCTCAGGATTGATCACTTTGTTAGAGTTATTACT GCCATTAAGGTAAAGGGCATGAGATTTGAATTGATTGGTGCTGCAATAATGCATTACGCAACTAAATGGCTACCAGGATT GATTAGCGACACGACAATCCCTGGCGACGAAGCGAGCAACTTCAGTATCAGTAATAGTAGTAGTAGTAGTAGCACCAGCT GGAAAGGTGGACTTCATATGATTGTGTCTGGACCCGGAACTAGAGATGACACCGCTTCAAGTCTTCAAGCTAAAGATCAA AGGATGATTATTGAGAGCCTCATCAGCATTATTCCACCACAGAAGGACAGTGTCTCATGCAGCTTCCTTCTTAGGCTCCT GAGAATGGCAATCATGTTAAAGGTTGCACCAGCACTAGTTACTGAATTAGAGAAAAGAGTGGGAATGCAATTTGAGCAGG CTACACTGACTGATCTTCTAATTCCTTCTTATGATAAAGGAGAGACTGTGTATGATGTGGATCTTATTCAGAGGCTATTG GAGCATTTTCTTGTACAAGAACTGACTGAAAGTTCTAGTCCAGGCAGAAAGTCCTTTTCTGAAAAAATTGTTGGATGTAA CCTTAATGCCAAGGCAAGAGTGGCTAGGCTTGTTGACAGTTATCTCACTGAGGTGTCCAGGGATAGAAACCTTTCCCTCA CAAAGTTTCAAGTACTGGCAGAAGCTTTGCCAGAGTCAGCTAGGACCTGTGATGATGGACTCTACAGAGCAATTGATTCC TATCTTAAGGTAATTATTTCCTGTTTCTATGGAAAAACGAAGCAAAAATGTTATTGA
Protein sequence (LotjaGi6g1v0350200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDIPGGPEAFEIAAKFCYGVAVDLTAGNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSCEKL SPWAENLQIVRRCSESIAWKACANPKGIRWSYTGRSVKHPSPKWNDLKDSSPSRNQQVPPDWWFEDASILRIDHFVRVIT AIKVKGMRFELIGAAIMHYATKWLPGLISDTTIPGDEASNFSISNSSSSSSTSWKGGLHMIVSGPGTRDDTASSLQAKDQ RMIIESLISIIPPQKDSVSCSFLLRLLRMAIMLKVAPALVTELEKRVGMQFEQATLTDLLIPSYDKGETVYDVDLIQRLL EHFLVQELTESSSPGRKSFSEKIVGCNLNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDS YLKVIISCFYGKTKQKCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
CDD | 1 | 54 | 54 | 4.44436E-28 | – | |
PANTHER | 1 | 404 | 404 | 4.0E-232 | ||
PANTHER | 1 | 404 | 404 | 4.0E-232 | ||
SUPERFAMILY | 8 | 44 | 37 | 4.32E-5 | ||
Pfam | 141 | 404 | 264 | 1.8E-89 | ||
ProSiteProfiles | 141 | 418 | 278 | 65.509 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0350200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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