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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0353000 |
| Transcript ID | LotjaGi6g1v0353000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CD2-binding protein-related, putative; TAIR: AT5G09390.1 CD2-binding protein-like protein; Swiss-Prot: sp|Q9CWK3|CD2B2_MOUSE CD2 antigen cytoplasmic tail-binding protein 2; TrEMBL-Plants: tr|I1MDW4|I1MDW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0353000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66528463..66532482) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATCAAAATATTACTGTGGTCCTTGTCTCCATGACCAAGTAACAAAAAAAAAAAAGGAGATTCAAAGAGAAAGAGAG GGTTCTCGTTCTCCGTCTTCAATTGTTGAACTGATTCTTCTTCTTGAGCAGCATCAATGGCGGGTGGATCATCTCGCAGC AGCGGTAAACGCCCCTTGGCGGAAGAAGATGAAGAATTCAGCAAAAAACCACCGTAATTTCTCTTCCCCTTTCACTCACT CACAAACCCTAATCCGATTCATTTCTATCGAGAAATTTCCTTTTATTGATAGAATCGATTTTTCTGACTCAAGTTATTAG ATATTGATTGCTGTGTAGTACTAGTTAGCTGTATGCGTGTGTGTCTGGTTTAGGATTTTTGCTTTGACATTGTTGTGATG AATTTATGAAACTGAGTTCTATTGTACTTGTTTTGAATGAATGAATTTACACAGAGCTAAGAGGGTAAGGTTTCCAAAGG GTAAGAAAGTGAAGCCAGGGGATGAAATAGTGGATATAGTAAATGTACCTGCAAAAGTTGAGGAGGATGAAAGCGACTTG ACGAACCCCCGTGCTGCTGCTAAAGAGCGCGCGAAACGCAGGAGCCAATTTACTTCCGAGCTCTTTCGCGAGGAAACTGG AGCTATCTTGAATGACGTAACAGCTGCTGAAATGAGATATGAGGTTTGTCTTTTTAGTTTTTCCTTGAATTCATACAAAA ATTTACCTAGTCGCTAGTACGTTAATCAATGTATGTGTATGACCTTTTTGCTGTCAATATAATTAAAATTGATGTTGGTT AAGAGATTACAGTATATATGAATATGATGTATTGATGTGGATGAAATTTTCATTTTGCATTTCTGCACTCTGCTGCTGCT ACTTTCAAATTTGAATCTACGCTGTTGTACACTACCGAATGCTGATTGAAATATTCCAGTTTTCAACGCTTGAGTTTTAT AAATTTGCAGTGATCAGGGTGTATGGAGTGTCTTTCTTTCGTTCTTCGTGGATTCTAGCATAAAAAAATATGTTTGTGAA GTTTGTAGGATGTAGACTATTGTGTGTGTGTATTTTGTGGTGTGTTTCTTTCCTAAAATTGGCAGTAATTTTTCATTCAA GGTGTTGCCACTTTCATCTGTTATTGGGTCCATATAAAAGGATAGGCAGGCAGTGATTGGTGATATCTGTTGGCAGGATA ATGAGAATTTTGTTGATGACGGGATTCAAATTGAGCCTTTCAACTTAAATAAAGAAAGGGAAGAAGGTTATTTTGATGCA TCAGGGAATTTTATCGAATACGTAAGAGATAATGAGATTAAGGTGAGACATTTAAATTATTTTTATTTGTGATTTGTGAC TATTTCATTTTGATTCTTTTAGTAAATTATTAAGGACCCTTGCAGGATGCCTGGCTTGATAATGTTGAAGTTGATCCAAG ATATGCTGCATTAGCCTCTGTGGAAAGAAATGAGGAGGAGGAGGAGGAGGCCCAAGAGCTTTCTTCCAAAGATATTGGAA TCATCAAGAGGCGCATTGCAGATGTTCTTGAACCAGAGGAAACAGTAAGCCTACATCTTATCATTCTGAGGGCCTGTTCA GTTTGAGAAATATTTTGTTGTGTTCACCAATAATTACAAAAGTGCTACCTAATTTTTAATGTTTTCTGTTCCCAAATATT TATATAGAAAAAGTGAAAAACTCTATATTTCTAGGGCTGTTGAGGGTCATTTGCCCGGTTGTATTAATTAATACTTCTTC CAATAGGTCTTGCAATGCTTGAGAAGGTTAAAAGGTAACAGTGATAGAAAGGCAAAGATGTCTTCTGAGACTAAGATTGT ATTTGACCAGCTAACTGAGGATGCTGCGAGGCTGATGGAGAATGGCGAATACAGTTAAGTTATTCTCATTGGGCTTTATA AATATTTGCCAAAGTTGGCAACTTGAAATATCCACTCATTACTATAGCCTAATGAGACCCTTTATGTTGTGCATCATATT TTTTGAAGAGTGTGTTTTTTGTGCACAATGTTTAATTTTGGGTTCTTTATTTTTTGTTCAGATGTTTATCATGAAAAGAA AGAGATTTTTGAGCGTGAAGCAGGTCAGTGTTTACCAGATGTCTTAATTCTACCTGTATTATGTTTTATTGTCATGTTCA CACCTTTACTTCATGTTCTGTGACATAAGTTATATAATTACCAAGTGTTTTGAATATACATCTAAATTTTCTATTGTAAT TGGATTTGTTGCCTGTTCTGTTAGTTCTTTTTATTATAATTCTGCTCAACTTGTGTTTCTATCATGGTCATGATATGAGA TGAAATTAGCTTCTCTATATCATAGTGTTTGTCAATTCTAAGTATCAGAGAAACCATTTTTTGAGCCTCCATCTTAAGCT TTGGATTTTGGGAAGTTGGTACTCAGCTGGATTTAATTGCAACATTTTCTTTGTCTCTTCTCTTTCCTTCCATGATGATA CTGACATATGTTTATGAGTAGAAAAGAAGGGTAACTAATTGCTCAAAGCTTATGCCTTTTATAATCTTCCTTTTTCAGAA GGATATGAGAAGGTTGCCCGGGCAAAAGGAGAAGGCACATCTCTGCTCTTAGGTGAAGGGAATTTTTATCTGAATGGGGA GGAAAAATTGCTTTCTGATGGTCGGGATTCTGGTGTGGCCTCTACATTGACTACTGCTATAGGGACTTCAAATCCACATT TGGCTAGTGCAGAAGTCTCAGGCAATGGTGACGACTTTGATATGTTTGGTGACGATGATGAGCCTGCTACCACTAAGCCA TCTACTGATGAAAATAGTACAGTTAGTCAACCATCATCAGATGCCATAAATTCCGGTAAAGAGGGTAAATATATTACCTC AACAAATTGGTATCTGAAATGGAAATTTTGTTGCTGATAAGTTTTTTATATGACATGGTTCTACTTTTCTTTCCAGGTGA AGCATTGCAAAACGATTATGTATATGATGAATCTTCTGGGTATGACTCTTCTCTTCCCTCTTCTTTTTTTGGAAATAATC TGACAAGTGTGACATTAGTCACCTATATTGCAGTGCCATAAAAAGTCACTTAGTACTCAATTCTTCTTTCTTTAAATGAA CTCTTTTATCAAACAGCTCTGTTGAAAACTTGATCTGACATCAATATAATGGTCCAGGTACTATTATAGCAGCAGTTTGG GCTATTATTATGATCCAAATACTGGCCTTTATTGCTCTGCAGCATCAGGGAAATGGTATTGTGCATTCATGATTCATTTT AGCACGTGTTGTGTGTCAGGTTTTATTTTGATATTTGTAGCTTTTTTGTTTATTAGTCATCCCAGACACGTCTTTGGATA TGTATTCTTAGCTTCATACAATTTGTTGGATGCACCTGGTTCATTCATTTTTTGGTCTTACACAGGTACTCGTTTAATGA GGAGTCTAACACTTACGATGAAGTTCATGAGGTTGCAGCTGATGTAAGTTGAGGAACTTGTTTCAAGTGAGTATAGTCTG TGTAGCATATCCACAATCATCGTCTATTAGTGGCATATGTACAGAGAAGCACTCTTGATCTTTTGAACATACTTTTTCTT GCGGGAATTTCTTCTTTAGGTGCTACTGCTAGCAGTTTTTCTGCTTTAATCTCTTAAGTTTTCTATCTATTATGTAATAT CTTAAACTTTGCGAGCAAAATTCTCCTAAAATGTTAACTAAGTTAAGAACAGTAGATGCTTACTCTTTCAATCTGGGAGC CCAGTACAGTTTTTCCTTCAACTTGCAAATCAGTTTGCTCATGCAATTAGATAGTTGTTGGCGTCAGTCTAGGACTGTTC ATGGTTCGGTTCTTTGCTTGAACCGAACCGAACCTGAACCAAAATTTTGGTTCGAGAGAACCGAACCGAACCGAACCGAT ATAGTATGGTTCGAACCGAACCGAACCGGTTTCAAATTTTGGTTAACCAGTTTGGTAAAATATGCATATTTATAGATGGT TCGAACCGAACCGAACCGAT
CDS sequence (LotjaGi6g1v0353000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGTGGATCATCTCGCAGCAGCGGTAAACGCCCCTTGGCGGAAGAAGATGAAGAATTCAGCAAAAAACCACCAGC TAAGAGGGTAAGGTTTCCAAAGGGTAAGAAAGTGAAGCCAGGGGATGAAATAGTGGATATAGTAAATGTACCTGCAAAAG TTGAGGAGGATGAAAGCGACTTGACGAACCCCCGTGCTGCTGCTAAAGAGCGCGCGAAACGCAGGAGCCAATTTACTTCC GAGCTCTTTCGCGAGGAAACTGGAGCTATCTTGAATGACGTAACAGCTGCTGAAATGAGATATGAGGATAATGAGAATTT TGTTGATGACGGGATTCAAATTGAGCCTTTCAACTTAAATAAAGAAAGGGAAGAAGGTTATTTTGATGCATCAGGGAATT TTATCGAATACGTAAGAGATAATGAGATTAAGGATGCCTGGCTTGATAATGTTGAAGTTGATCCAAGATATGCTGCATTA GCCTCTGTGGAAAGAAATGAGGAGGAGGAGGAGGAGGCCCAAGAGCTTTCTTCCAAAGATATTGGAATCATCAAGAGGCG CATTGCAGATGTTCTTGAACCAGAGGAAACAGTCTTGCAATGCTTGAGAAGGTTAAAAGGTAACAGTGATAGAAAGGCAA AGATGTCTTCTGAGACTAAGATTGTATTTGACCAGCTAACTGAGGATGCTGCGAGGCTGATGGAGAATGGCGAATACAAT GTTTATCATGAAAAGAAAGAGATTTTTGAGCGTGAAGCAGAAGGATATGAGAAGGTTGCCCGGGCAAAAGGAGAAGGCAC ATCTCTGCTCTTAGGTGAAGGGAATTTTTATCTGAATGGGGAGGAAAAATTGCTTTCTGATGGTCGGGATTCTGGTGTGG CCTCTACATTGACTACTGCTATAGGGACTTCAAATCCACATTTGGCTAGTGCAGAAGTCTCAGGCAATGGTGACGACTTT GATATGTTTGGTGACGATGATGAGCCTGCTACCACTAAGCCATCTACTGATGAAAATAGTACAGTTAGTCAACCATCATC AGATGCCATAAATTCCGGTGAAGCATTGCAAAACGATTATGTATATGATGAATCTTCTGGGTACTATTATAGCAGCAGTT TGGGCTATTATTATGATCCAAATACTGGCCTTTATTGCTCTGCAGCATCAGGGAAATGGTACTCGTTTAATGAGGAGTCT AACACTTACGATGAAGTTCATGAGGTTGCAGCTGATGTAAGTTGA
Protein sequence (LotjaGi6g1v0353000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGSSRSSGKRPLAEEDEEFSKKPPAKRVRFPKGKKVKPGDEIVDIVNVPAKVEEDESDLTNPRAAAKERAKRRSQFTS ELFREETGAILNDVTAAEMRYEDNENFVDDGIQIEPFNLNKEREEGYFDASGNFIEYVRDNEIKDAWLDNVEVDPRYAAL ASVERNEEEEEEAQELSSKDIGIIKRRIADVLEPEETVLQCLRRLKGNSDRKAKMSSETKIVFDQLTEDAARLMENGEYN VYHEKKEIFEREAEGYEKVARAKGEGTSLLLGEGNFYLNGEEKLLSDGRDSGVASTLTTAIGTSNPHLASAEVSGNGDDF DMFGDDDEPATTKPSTDENSTVSQPSSDAINSGEALQNDYVYDESSGYYYSSSLGYYYDPNTGLYCSAASGKWYSFNEES NTYDEVHEVAADVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| PANTHER | 20 | 405 | 386 | 8.8E-92 | ||
| MobiDBLite | 55 | 76 | 22 | - | – | |
| Coils | 159 | 179 | 21 | - | – | |
| MobiDBLite | 307 | 352 | 46 | - | – | |
| MobiDBLite | 334 | 352 | 19 | - | – | |
| Pfam | 357 | 406 | 50 | 1.4E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | U5 snRNP | A ribonucleoprotein complex that contains small nuclear RNA U5. |
Expression pattern of LotjaGi6g1v0353000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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