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IPR041591

Source: InterPro

Description

IPR041591 is a OCRE domain.

<p>The OCtamer REpeat (OCRE) has been annotated as a 42-residue sequence motif with 12 tyrosine residues in the spliceosome trans-regulatory elements RBM5 and RBM10 (RBM [RNA-binding motif]), which are known to regulate alternative splicing of Fas and Bcl-x pre-mRNA transcripts [[cite:PUB00091636]]. The structure of the domain consists of an anti-parallel arrangement of six β strands.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0176900.1
– D111/G-patch domain protein; TAIR: AT4G34140.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10; TrEMBL-Plants: tr|I1JXA4|I1JXA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0176900
Domains
10
LotjaGi4g1v0071400.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT1G49590.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q7XA66|ZOP1_ARATH Zinc finger protein ZOP1; TrEMBL-Plants: tr|I3S6A8|I3S6A8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0071400
Domains
15
LotjaGi4g1v0147400.1
– RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400
Domains
27
LotjaGi4g1v0147400.2
– RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U3A2|A0A072U3A2_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400
Domains
23
LotjaGi4g1v0147400.3
– RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400
Domains
27
LotjaGi4g1v0147400.4
– RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400
Domains
27
LotjaGi4g1v0147400.5
– RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072TS81|A0A072TS81_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400
Domains
27
LotjaGi6g1v0353000.1
– CD2-binding protein-related, putative; TAIR: AT5G09390.1 CD2-binding protein-like protein; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|I1MDW4|I1MDW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0353000
Domains
6
LotjaGi6g1v0353000.2
– CD2-binding protein-related, putative; TAIR: AT5G09390.1 CD2-binding protein-like protein; Swiss-Prot: sp|Q9CWK3|CD2B2_MOUSE CD2 antigen cytoplasmic tail-binding protein 2; TrEMBL-Plants: tr|I1MDW4|I1MDW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0353000
Domains
6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 11.11