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LotjaGi6g1v0364700.4

Overview

Field Value
Gene ID LotjaGi6g1v0364700
Transcript ID LotjaGi6g1v0364700.4
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Chaperone DnaK; TAIR: AT4G24280.1 chloroplast heat shock protein 70-1; Swiss-Prot: sp|Q02028|HSP7S_PEA Stromal 70 kDa heat shock-related protein, chloroplastic; TrEMBL-Plants: tr|Q1SKX2|Q1SKX2_MEDTR 70 kDa heat shock protein; Found in the gene: LotjaGi6g1v0364700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:67674392..67675649) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGGTGGTAAACCCACCATCATAACCAACGCCGAGGGCCAGAGAACCACCCCCTCCGTCGTCGCCTACACCAAAAA CGGTGACAGGCTCGTTGGTCAAATCGCCAAGCGTCAGGCCGTGGTCAACCCTGAGAACACTTTTTTCTCCGTCAAGAGGT TCATTGGGAGGAAGATGTCCGAGGTCGACGAAGAGTCCAAGCAGGTCTCTTACAGGGTCATCAGGGACGAGAATGGCAAC GTCAAGCTCGATTGCCCCGCTATTGGCAAGAGTTTCGCTGCCGAAGAAATCTCTGCTCAGGTTCATTTTCAGCTTTCTGT TTTGCACTGCACTAATTAGCTAGCTATTTCATTTTTCATTTCATTGTCCATTTGTCATATATTATATTATATTATATTAT ATTATAGGTCTTGAGGAAGCTTGTAGATGATGCTTCCAAGTTTTTGAATGATAAAGTCACCAAGGCAGTAGTTACTGTCC CTGCTTACTTCAATGATTCCCAAAGAACTGCTACCAAGGATGCTGGCAAGATTGCTGGTTTAGAAGTTCTTCGTATTATC AATGAACCCACTGCTGCATCCTTGGCTTATGGCTTTGAAAGGAAAAACAATGAAACTATCTTGGTATTTGACCTTGGAGG TGGTACTTTTGATGTCTCAGGTAACTTTTCCAACCACATCATCATGCTTCAATTCTCTTTTTATTTCTATTAAGCCTGAT TTCTATCCAACTCCATTCTAGTGCTTGAGGTTGGTGATGGAGTGTTTGAAGTCTTGTCTACTTCTGGTGATACACACTTA GGTGGTGATGACTTTGATAAGGTTAGACTTGTTTTACCATCCTAAACTACAAATCTTATACTTTGGTTTATCTTATGATT AACATTTCTCATATCTTATCTGTTGGCTGTAGAGAATTGTCGATTGGCTGGCTGCAGACTTCAAGAGAAATGAAGGTATA GACCTTTTGAAAGACAAACAAGCTCTTCAGCGTCTCACTGAAACTGCTGAGAAAGCTAAAATGGAGCTCTCATCATTGAC TCAAACTAACATCAGGTATTTACCATACCATTGACCAATCTTCACCCATTCCAAAAGTTTGAGCCCCTCTTTAGCTTAAT GCAAACTACTGAAATACTGCTGTCTGCGTTTTCAGTTTGCCGTTCATAACTGCAACAGCAGATGGCCCCAAGCATATTGA GACCACCCTTACAAGGGCTAAGTTTGAGGAATTATGTTCAGATCTCCTTGACAGGTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0364700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGTGGTAAACCCACCATCATAACCAACGCCGAGGGCCAGAGAACCACCCCCTCCGTCGTCGCCTACACCAAAAA CGGTGACAGGCTCGTTGGTCAAATCGCCAAGCGTCAGGCCGTGGTCAACCCTGAGAACACTTTTTTCTCCGTCAAGAGGT TCATTGGGAGGAAGATGTCCGAGGTCGACGAAGAGTCCAAGCAGGTCTCTTACAGGGTCATCAGGGACGAGAATGGCAAC GTCAAGCTCGATTGCCCCGCTATTGGCAAGAGTTTCGCTGCCGAAGAAATCTCTGCTCAGGTCTTGAGGAAGCTTGTAGA TGATGCTTCCAAGTTTTTGAATGATAAAGTCACCAAGGCAGTAGTTACTGTCCCTGCTTACTTCAATGATTCCCAAAGAA CTGCTACCAAGGATGCTGGCAAGATTGCTGGTTTAGAAGTTCTTCGTATTATCAATGAACCCACTGCTGCATCCTTGGCT TATGGCTTTGAAAGGAAAAACAATGAAACTATCTTGGTATTTGACCTTGGAGGTGGTACTTTTGATGTCTCAGTGCTTGA GGTTGGTGATGGAGTGTTTGAAGTCTTGTCTACTTCTGGTGATACACACTTAGGTGGTGATGACTTTGATAAGAGAATTG TCGATTGGCTGGCTGCAGACTTCAAGAGAAATGAAGGTATAGACCTTTTGAAAGACAAACAAGCTCTTCAGCGTCTCACT GAAACTGCTGAGAAAGCTAAAATGGAGCTCTCATCATTGACTCAAACTAACATCAGTTTGCCGTTCATAACTGCAACAGC AGATGGCCCCAAGCATATTGAGACCACCCTTACAAGGGCTAAGTTTGAGGAATTATGTTCAGATCTCCTTGACAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0364700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGGKPTIITNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDENGN VKLDCPAIGKSFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGKIAGLEVLRIINEPTAASLA YGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAADFKRNEGIDLLKDKQALQRLT ETAEKAKMELSSLTQTNISLPFITATADGPKHIETTLTRAKFEELCSDLLDR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19375:SF389
1 292 292 4.2E-200 –
PANTHER
PTHR19375
1 292 292 4.2E-200
IPR013126
Pfam
PF00012
1 292 292 1.5E-134
IPR013126
SUPERFAMILY
SSF53067
2 165 164 1.42E-48
IPR043129
Gene3D
G3DSA:3.30.420.40
2 165 164 2.4E-113 –
PRINTS
PR00301
13 25 13 2.7E-25 –
PRINTS
PR00301
36 44 9 2.7E-25 –
Gene3D
G3DSA:3.30.30.30
49 100 52 2.4E-113 –
PRINTS
PR00301
120 140 21 2.7E-25 –
Gene3D
G3DSA:3.30.420.40
166 204 39 2.4E-113 –
SUPERFAMILY
SSF53067
168 292 125 1.06E-41
IPR043129
ProSitePatterns
PS00329
173 186 14 -
IPR018181
PRINTS
PR00301
179 189 11 2.7E-25 –
Gene3D
G3DSA:3.90.640.10
205 292 88 2.4E-113 –
Coils
Coil
229 256 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0364700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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