Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001969
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 118 results. Now displaying 3 of 3 with 50 rows per page. This search has taken 5.284s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0055000.1
n.a. Eukaryotic aspartyl protease family protein; TAIR: AT1G66180.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1; TrEMBL-Plants: tr|G7J8R7|G7J8R7_MEDTR Eukaryotic aspartyl protease family protein; Found in the gene: LotjaGi6g1v0055000 LjG1.1_chr6 9898430 9900543 +
2 domain predictions
2 GO terms
LotjaGi6g1v0055000.2
n.a. Eukaryotic aspartyl protease family protein; TAIR: AT1G66180.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1; TrEMBL-Plants: tr|I1LMA8|I1LMA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0055000 LjG1.1_chr6 9898671 9900161 +
2 domain predictions
2 GO terms
LotjaGi6g1v0062900.1
n.a. Aspartic proteinase nepenthesin; TAIR: AT2G39710.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1; TrEMBL-Plants: tr|A0A072UYS9|A0A072UYS9_MEDTR Aspartic proteinase nepenthesin; Found in the gene: LotjaGi6g1v0062900 LjG1.1_chr6 11566119 11569783 -
2 domain predictions
2 GO terms
LotjaGi6g1v0137200_LC.1
n.a. Eukaryotic aspartyl protease family protein; TAIR: AT1G64830.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1; TrEMBL-Plants: tr|A0A151RGY3|A0A151RGY3_CAJCA Aspartic proteinase nepenthesin-1; Found in the gene: LotjaGi6g1v0137200_LC LjG1.1_chr6 39947287 39948474 +
2 domain predictions
2 GO terms
LotjaGi6g1v0174700.1
n.a. Eukaryotic aspartyl protease family protein; TAIR: AT3G59080.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1; TrEMBL-Plants: tr|I1N0Z7|I1N0Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0174700 LjG1.1_chr6 46499411 46502078 -
2 domain predictions
2 GO terms
LotjaGi6g1v0175600.1
n.a. Eukaryotic aspartyl protease family protein; TAIR: AT3G59080.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1; TrEMBL-Plants: tr|I1N0Z7|I1N0Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0175600 LjG1.1_chr6 46582423 46584838 -
2 domain predictions
2 GO terms
LotjaGi6g1v0182500_LC.1
n.a. Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P16900|GAG_OMVVS Gag polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0182500_LC LjG1.1_chr6 47523635 47534224 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.1
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A0A151TQZ3|A0A151TQZ3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51283722 51290306 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.3
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51283722 51308962 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.4
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr|A0A151TQZ3|A0A151TQZ3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51283723 51290306 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.5
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51283987 51308962 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.6
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51293877 51308962 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.7
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51293884 51309007 +
2 domain predictions
2 GO terms
LotjaGi6g1v0214100_LC.9
n.a. Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC LjG1.1_chr6 51293892 51308297 +
2 domain predictions
2 GO terms
LotjaGi6g1v0217600.1
n.a. Aspartic proteinase; TAIR: AT1G62290.1 Saposin-like aspartyl protease family protein; Swiss-Prot: sp|P42211|ASPRX_ORYSJ Aspartic proteinase; TrEMBL-Plants: tr|V7AY39|V7AY39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0217600 LjG1.1_chr6 51971272 51975928 +
2 domain predictions
2 GO terms
LotjaGi6g1v0217600.2
n.a. Aspartic proteinase; TAIR: AT1G62290.1 Saposin-like aspartyl protease family protein; Swiss-Prot: sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1; TrEMBL-Plants: tr|V7AY39|V7AY39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0217600 LjG1.1_chr6 51971272 51975928 +
2 domain predictions
2 GO terms
LotjaGi6g1v0278600.1
n.a. Eukaryotic aspartyl protease family protein; TAIR: AT5G10770.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q8S9J6|ASPA_ARATH Aspartyl protease family protein At5g10770; TrEMBL-Plants: tr|V7BNH0|V7BNH0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0278600 LjG1.1_chr6 59529253 59532160 +
2 domain predictions
2 GO terms
LotjaGi6g1v0292400.1
n.a. Aspartic proteinase; TAIR: AT1G11910.1 aspartic proteinase A1; Swiss-Prot: sp|O65390|APA1_ARATH Aspartic proteinase A1; TrEMBL-Plants: tr|I1MFJ1|I1MFJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0292400 LjG1.1_chr6 61054285 61058624 +
2 domain predictions
2 GO terms