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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008972
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 246 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 5.469s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1472930.1
n.a. Laccase [Medicago truncatula] gi|357472833|ref|XP_003606701.1| chr2 23603036 23605453 -
3 domain predictions
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Lj2g3v1734800.1
n.a. PREDICTED: laccase-11-like [Glycine max] gi|356496745|ref|XP_003517226.1| chr2 26827571 26831690 -
3 domain predictions
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Lj2g3v1734800.2
n.a. PREDICTED: laccase-11-like [Glycine max] gi|356495402|ref|XP_003516567.1| chr2 26834182 26837356 -
3 domain predictions
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Lj2g3v1829930.1
n.a. PREDICTED: L-ascorbate oxidase homolog isoform X2 [Cicer arietinum] gi|502160978|ref|XP_004511977.1| chr2 27649668 27652715 -
3 domain predictions
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Lj2g3v1829930.2
n.a. PREDICTED: L-ascorbate oxidase homolog isoform X2 [Cicer arietinum] gi|502160978|ref|XP_004511977.1| chr2 27650223 27652529 -
3 domain predictions
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Lj2g3v2136010.1
n.a. ascorbate oxidase [Lotus japonicus] gi|400001046|gb|AFP65861.1| chr2 32352688 32356363 -
3 domain predictions
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Lj2g3v2353640.1
n.a. PREDICTED: laccase-3-like [Glycine max] gi|356498985|ref|XP_003518325.1| chr2 33864576 33868348 +
3 domain predictions
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Lj2g3v2353640.2
n.a. PREDICTED: laccase-3-like [Cicer arietinum] gi|502096208|ref|XP_004490661.1| chr2 33865037 33868348 +
3 domain predictions
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Lj2g3v2833010.1
n.a. PREDICTED: laccase-5-like [Glycine max] gi|356551363|ref|XP_003544045.1| chr2 36960983 36964170 -
3 domain predictions
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Lj2g3v3007580.1
n.a. Early nodulin-like protein [Medicago truncatula] gi|357493827|ref|XP_003617202.1| chr2 38892365 38895094 +
3 domain predictions
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Lj2g3v3106160.1
n.a. PREDICTED: early nodulin-like protein 3-like [Cicer arietinum] gi|502125115|ref|XP_004498804.1| chr2 39989829 39991128 -
3 domain predictions
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Lj3g3v0424200.1
n.a. PREDICTED: blue copper protein-like [Cicer arietinum] gi|502107683|ref|XP_004493343.1| chr3 3828612 3829214 +
3 domain predictions
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Lj3g3v0429630.1
n.a. n.a. chr3 4406566 4408510 +
3 domain predictions
 –
Lj3g3v0429640.1
n.a. PREDICTED: early nodulin-like protein 2-like [Cicer arietinum] gi|502155324|ref|XP_004510033.1| chr3 4406566 4408510 -
3 domain predictions
 –
Lj3g3v0429650.1
n.a. PREDICTED: early nodulin-like protein 2-like [Cicer arietinum] gi|502155324|ref|XP_004510033.1| chr3 4407733 4408510 -
3 domain predictions
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Lj3g3v0567090.1
n.a. PREDICTED: uclacyanin-2-like [Cicer arietinum] gi|502173488|ref|XP_004515341.1| chr3 6323388 6324951 +
3 domain predictions
 –
Lj3g3v1010880.1
n.a. Early nodulin-like protein [Medicago truncatula] gi|357474785|ref|XP_003607678.1| chr3 13371230 13372482 -
3 domain predictions
 –
Lj3g3v1341610.1
n.a. Blue copper protein [Medicago truncatula] gi|357453527|ref|XP_003597041.1| chr3 17399336 17403792 -
3 domain predictions
 –
Lj3g3v2313090.1
n.a. Basic blue protein [Medicago truncatula] gi|357519409|ref|XP_003629993.1| chr3 28186720 28187560 -
3 domain predictions
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Lj3g3v2313110.1
n.a. Os03g0709300 [Oryza sativa Japonica Group] gi|115454887|ref|NP_001051044.1| chr3 28192261 28192919 -
3 domain predictions
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Lj3g3v2477620.1
n.a. PREDICTED: laccase-6-like [Glycine max] gi|356522496|ref|XP_003529882.1| chr3 30407802 30412545 +
3 domain predictions
 –
Lj3g3v2679640.1
n.a. PREDICTED: laccase-4-like [Glycine max] gi|356498932|ref|XP_003518300.1| chr3 32623810 32629215 -
3 domain predictions
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Lj3g3v2809780.1
n.a. PREDICTED: early nodulin-like protein 2-like [Cicer arietinum] gi|502082781|ref|XP_004487271.1| chr3 34579263 34580799 -
3 domain predictions
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Lj3g3v2838670.1
n.a. PREDICTED: early nodulin-like protein 1-like [Glycine max] gi|356542203|ref|XP_003539559.1| chr3 34911003 34912272 -
3 domain predictions
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Lj3g3v2909710.1
n.a. L-ascorbate oxidase-like protein [Medicago truncatula] gi|357471325|ref|XP_003605947.1| chr3 36281058 36283183 +
3 domain predictions
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Lj3g3v2910760.1
n.a. multicopper oxidase [Citrus maxima] gi|478622056|gb|AGJ03718.1| chr3 36295362 36299204 +
3 domain predictions
 –
Lj3g3v2920880.1
n.a. PREDICTED: laccase-6-like [Glycine max] gi|356522496|ref|XP_003529882.1| chr3 36360458 36361590 +
2 domain predictions
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Lj3g3v3261440.1
n.a. L-ascorbate oxidase-like protein [Medicago truncatula] gi|357475057|ref|XP_003607814.1| chr3 40166941 40168770 +
3 domain predictions
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Lj3g3v3553930.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356538526|ref|XP_003537754.1| chr3 43274063 43277766 -
3 domain predictions
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Lj3g3v3553930.2
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356538526|ref|XP_003537754.1| chr3 43274063 43278232 -
3 domain predictions
 –
Lj4g3v0136710.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356563035|ref|XP_003549771.1| chr4 1471647 1476099 +
3 domain predictions
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Lj4g3v0176450.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356563668|ref|XP_003550083.1| chr4 2130530 2135433 -
3 domain predictions
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Lj4g3v0669660.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356577149|ref|XP_003556690.1| chr4 11164734 11165855 +
3 domain predictions
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Lj4g3v0669710.1
n.a. L-ascorbate oxidase-like protein [Medicago truncatula] gi|357475057|ref|XP_003607814.1| chr4 11180650 11182479 +
3 domain predictions
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Lj4g3v1881060.1
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr4 26305515 26306138 +
3 domain predictions
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Lj4g3v1881230.1
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr4 26377078 26378877 +
3 domain predictions
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Lj4g3v1881240.1
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr4 26377078 26398497 +
3 domain predictions
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Lj4g3v1881240.2
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr4 26377078 26387750 +
3 domain predictions
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Lj4g3v1881300.1
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr4 26409986 26411978 +
3 domain predictions
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Lj4g3v1881310.1
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr4 26409986 26412286 +
3 domain predictions
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Lj4g3v1983610.1
n.a. RecName: Full=Early nodulin-16; Short=N-16; Flags: Precursorgi|1771349|emb|CAA67829.1| ENOD16 [Medicago truncatula] gi|3914141|sp|P93328.1|NO16_MEDTR chr4 27650846 27652629 -
3 domain predictions
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Lj4g3v2704680.1
n.a. Basic blue protein [Medicago truncatula] gi|357519409|ref|XP_003629993.1| chr4 36410430 36411792 -
3 domain predictions
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Lj4g3v2704690.1
n.a. Basic blue protein [Medicago truncatula] gi|357519409|ref|XP_003629993.1| chr4 36414122 36415849 -
3 domain predictions
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Lj4g3v2817870.1
n.a. PREDICTED: L-ascorbate oxidase-like [Cicer arietinum] gi|502140076|ref|XP_004504046.1| chr4 37568674 37571964 -
3 domain predictions
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Lj4g3v3114580.1
n.a. PREDICTED: laccase-1-like [Fragaria vesca subsp]. vesca] gi|470130735|ref|XP_004301258.1| chr4 42019837 42023063 -
3 domain predictions
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Lj5g3v0266920.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356564404|ref|XP_003550444.1| chr5 2196293 2200693 -
3 domain predictions
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Lj5g3v0266920.2
n.a. PREDICTED: L-ascorbate oxidase homolog [Cicer arietinum] gi|502126474|ref|XP_004499321.1| chr5 2196293 2202331 -
3 domain predictions
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Lj5g3v0508050.1
n.a. PREDICTED: early nodulin-like protein 3-like [Cicer arietinum] gi|502125115|ref|XP_004498804.1| chr5 4978023 4979322 +
3 domain predictions
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Lj5g3v1062410.1
n.a. Blue copper protein [Medicago truncatula] gi|357478161|ref|XP_003609366.1| chr5 17235473 17236096 -
3 domain predictions
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Lj5g3v1697330.1
n.a. PREDICTED: blue copper protein-like [Glycine max] gi|356576407|ref|XP_003556323.1| chr5 24213511 24214723 -
3 domain predictions
 –