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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000183
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.577s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2264900.1
n.a. ornithine decarboxylase [Lotus japonicus] gi|34495197|emb|CAE02644.1| chr1 26564474 26567841 +
2 domain predictions
1 GO term
Lj1g3v2264910.1
n.a. ornithine decarboxylase [Lotus japonicus] gi|34495197|emb|CAE02644.1| chr1 26564803 26567956 +
2 domain predictions
1 GO term
Lj1g3v3354480.1
n.a. arginine decarboxylase [Lotus japonicus] gi|34495199|emb|CAE02645.1| chr1 38530668 38534514 +
2 domain predictions
1 GO term
Lj1g3v3354490.1
n.a. arginine decarboxylase [Lotus japonicus] gi|34495199|emb|CAE02645.1| chr1 38531589 38533526 +
2 domain predictions
1 GO term
Lj1g3v4580610.1
n.a. PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like [Cicer arietinum] gi|502161433|ref|XP_004512163.1| chr1 54697483 54705065 -
2 domain predictions
1 GO term
Lj1g3v4580610.2
n.a. PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like [Cicer arietinum] gi|502161433|ref|XP_004512163.1| chr1 54698467 54705065 -
2 domain predictions
1 GO term
Lj3g3v3386760.1
n.a. PREDICTED: arginine decarboxylase-like [Cicer arietinum] gi|502149391|ref|XP_004507509.1| chr3 41870523 41873537 +
2 domain predictions
1 GO term
LotjaGi1g1v0432800.1
n.a. Ornithine decarboxylase; TAIR: AT3G14390.1 Pyridoxal-dependent decarboxylase family protein; Swiss-Prot: sp|P50134|DCOR_DATST Ornithine decarboxylase; TrEMBL-Plants: tr|Q70KF6|Q70KF6_LOTJA Ornithine decarboxylase; Found in the gene: LotjaGi1g1v0432800 LjG1.1_chr1 92770435 92782431 +
2 domain predictions
1 GO term
LotjaGi1g1v0562700.1
n.a. Arginine decarboxylase; TAIR: AT4G34710.1 arginine decarboxylase 2; Swiss-Prot: sp|Q39827|SPE1_SOYBN Arginine decarboxylase; TrEMBL-Plants: tr|Q70KF5|Q70KF5_LOTJA Arginine decarboxylase; Found in the gene: LotjaGi1g1v0562700 LjG1.1_chr1 109481377 109486285 +
2 domain predictions
1 GO term
LotjaGi1g1v0690900.1
n.a. Diaminopimelate decarboxylase; TAIR: AT5G11880.1 Pyridoxal-dependent decarboxylase family protein; Swiss-Prot: sp|Q94A94|DCDA2_ARATH Diaminopimelate decarboxylase 2, chloroplastic; TrEMBL-Plants: tr|A0A151TUY1|A0A151TUY1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0690900 LjG1.1_chr1 125901230 125907505 +
2 domain predictions
1 GO term
LotjaGi3g1v0514900.1
n.a. Arginine decarboxylase; TAIR: AT2G16500.1 arginine decarboxylase 1; Swiss-Prot: sp|Q43075|SPE1_PEA Arginine decarboxylase; TrEMBL-Plants: tr|Q2PEQ1|Q2PEQ1_TRIPR Arginine decarboxylase; Found in the gene: LotjaGi3g1v0514900 LjG1.1_chr3 93202000 93205212 +
2 domain predictions
1 GO term