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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0514900 |
| Transcript ID | LotjaGi3g1v0514900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine decarboxylase; TAIR: AT2G16500.1 arginine decarboxylase 1; Swiss-Prot: sp|Q43075|SPE1_PEA Arginine decarboxylase; TrEMBL-Plants: tr|Q2PEQ1|Q2PEQ1_TRIPR Arginine decarboxylase; Found in the gene: LotjaGi3g1v0514900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93202000..93205212) extracted from Lotus japonicus Gifu genome v1.2.
TAATCAAAAACCACTACCCATAATTCCTCAGTTGAACAATGAACTTTCCAACGCATAATATTCATGGGGACTAATTCGAT CATTCACTCTTTTTAATACTAAAGAATTCTTGATTTAGGACTTTTGTTAGGAGTATAGAATCCGGGTCTTGAGGGCCCAA ACAAATCCCATTCTTCCCCTTTCCCTCCCTATATAAACTGCTCTCTCCCTTGCAATCGTTTCTCACTTCTTCCTTCTCTA AACCTGCCACCCTCATAATCATTTTCGTTATCTTGTTGGTTTGAATTCTTTCTATCACTCCCAATTTTTCAACATTTTCA TTCTTCTGCACCACTCATTCCAATCTCACTCACCTCAATTTTCTCCGTTTTTTCACTCGCAAACCAGATCCGCATGCTGT GCATGCTTAATTCCGTTACCCCTCAATTTTCCTTCCCTTTCTCCATAACCACCGTTCCTAGATCCTCCTCCTCCTGAGTC GCCGGAGTCACTGCTCGATCTGAATCAACGGTGGTGTTGCGGTGGTGATTCCTCCTTCCCCGACCAACCTCTCACTGCTT CCTTCTGAGGGGGTAGCCGAGGCGGGGCCTCTGCCTCGTCGGCTTTCAAAGCCCCCAATCTCACAATCTCAAACCCTAAT TTCTCACCATGCCGGCCATGGCGTGTGGCGCTGCTGTTCTCCCCCTTCCCGGCTACACTCTCGCCGGAGACACAGACACC TCTCTTCCGCCTCCGCCGCCGCTCACATTTTCCGCCGACGACACCTGGTCGCCCTCCTTGTCGTCTAAGCTTTACAGGAT CGACGCCTGGGGCGGTCCTTACTTTACCGTCAACTCCGCCGGGAACGTGTCTGTCCGCCCCCACGGGGCGGCCACGCTGG CTCACCAGGAGATTGATCTGCTCAAGGTCGTGAAGAAAGCGTCCGACCCGAAATGCTGCGGCGGACTCGGGTTGCAGCTG CCTCTCGTTATCCGGTTCCCGGATGCTCTCAAGAACCGGGTTGAGTCCCTTCAATCTGCCTTCGACTGCGCGATTCAATC GCAGGGGTATGAGTCCAGTTACCAGGGTGTGTTCCCTGTGAAGTGCAACCAGGACCGGTTCGTTGTGGAGGATATCGTGA GGTTCGGTTCGTCGTTCCGGTTCGGTTTGGAGGCAGGGTCGAAGCCAGAGCTTCTTCTGGCTATGAGCTGTTTGTGTAAG GGAAACAGAGAAGCGTTTCTGGTCTGCAATGGGTTCAAAGACAGCGAGTATATCACTCTGGCATTGGTTGCGAGGAAACT GGAATTGAACACTGTGATTGTTCTGGAGCAAGAGGAGGAGCTTGACATTGTGATTGAAGTCAGCAACAAGCTCTGCATTC GTCCTGTGATTGGGGTTCGAGCGAAGCTGAGGACTAAGCATTCTGGCCATTTTGGAGGAACTTCAGGGGATAAAGGGAAG TTCGGTTTGACAACTACCCAGATTCTTCGTGTGGTGAAGAAGCTTGAGCAAGTGGGCATGCTTGATTGCCTGCAATTGCT GCATTTCCACATTGGTTCTCAGATTCCCCACACTGCATTGCTTTCTGATGGTTTGGGGGAAGCTGCACAGATTTACTGTG AACTGCTTCGACTGGGTGCCCAGATGCGAGTTCTTGATATTGGTGGTGGTTTGGGCATAGATTATGATGGTTCTAAGTCC ACGGATTCTGATATCTCTGTTGGGTATAGTCTTGAAGAGTATGCTGCAGCTGTTGTTCACACGGTGAAGAATGTTTGTGA CCGCAGGAACGTGAGGCATCCTGTGATTTGCAGTGAGAGTGGCAGAGCCATTGTGTCTCATCATTCAGTGTTGATTTTCG AGGCTGTTGGTGCTAGTGGTAATAGAGGTAGAGACTCTGCATTGTCCACCATTGAATTGCAGTGTTTGGGAGAGGGGTTA TCAGAGGAAGCTCTTGCTGATTATCAGAACATGTCTTCTGCAACCATTCGAGGCGAGTATGAAACCTGTTTGCGCTACGC GGAGCAGTTCAAGAAACGGTGCGTTGAACAGTTCAAGCAAGGGAGTTTGGGGATGGAACAGCTTGCAGCAGTGGATGGTT TGTGTGATTTGATCACTGAGGCAATTGGGGTGAACGATCCAGTTCAAAAGTACCACATGAACCTCTCTGTGTTCACATCA ATCCCTGATTTCTGGGCATTCGAGCAACTTTTTCCCATAGTCCCAATTCATCGTCTCGATGAGAAGCCTACCGCGAAGGG GATTCTATCAGATTTGACCTGCGACAGTGACGGGAAGATTGACAAGTTCATCGGTGGTGAGTCCAGCTTGCCGCTCCATG AATTGGAAGACGGGCACTACTACTTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTCGGTGGTGTTCACAACCTG TTTGGTGGCCCAAGCGTGGTGAGGGTGGTGCAGAGCGACGGGCCTCACGGTTTCGCGGTGACGCGTGCGGTGGCTGGGCC GTCTTGTGGGGATGTCCTCCGAGCAATGCAGCATCAGCCAGAGCTCATGTTCGAGACCCTCAAGCATCGCGTGCTGGAGT TTGATCAGGATGAAGTGAATGCTGCTGCAGTGGTGGCTAGCCTCGCGCGTTCCTTCGACAAAATGCCTTATCTGGTTGCG GCTAAGCCTTGTTGCTTCAATGCTGTTAGTAATGGTGGTTTTTACCACTGCTCCGGTGATGATTTCAGTGCTGATTCTGG TGGCGGCGGCGGCGGCAGCGGCAGCGCTGGTGGAGAAGAGGAGCATTGGTCTTATTGCTGTGCTTGAGTTTGGTCGTTTA GCATTCCCCTATTGTCGCTTTGTTGTTGTTGGTTGTCTGTTAAATAAACCTATTCCTTTGTCCTTACTATTGGCTCCTTA TTTTTATTTAGCAAAGGATGTAAGTAGAAGGGCAGGGTCCTCCTCTGTCTTTAGATTTTGCAACTTCAGCATCCTTTAAT CTCGACTCTTTCTGCTAATTTCTTGTTTTTAATAGATTTTCATGATACTTGATTGTGACTTTATGTTTAGAATAAAAAAA TCATGTTATATGGCTAGGTTTATATACTTGAGCATAGAAAGTAACTATATGTTCATGTTACTAATGGACTGCTTAACTTA TTAATTCTTTCACTTTCATCACTGCATGCCGTTTTCCAGCATGATTGAGAGATCAGAGTGAAACTGTTCAGAATGTAGTT AAGATACTTGTTG
CDS sequence (LotjaGi3g1v0514900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGCCATGGCGTGTGGCGCTGCTGTTCTCCCCCTTCCCGGCTACACTCTCGCCGGAGACACAGACACCTCTCTTCC GCCTCCGCCGCCGCTCACATTTTCCGCCGACGACACCTGGTCGCCCTCCTTGTCGTCTAAGCTTTACAGGATCGACGCCT GGGGCGGTCCTTACTTTACCGTCAACTCCGCCGGGAACGTGTCTGTCCGCCCCCACGGGGCGGCCACGCTGGCTCACCAG GAGATTGATCTGCTCAAGGTCGTGAAGAAAGCGTCCGACCCGAAATGCTGCGGCGGACTCGGGTTGCAGCTGCCTCTCGT TATCCGGTTCCCGGATGCTCTCAAGAACCGGGTTGAGTCCCTTCAATCTGCCTTCGACTGCGCGATTCAATCGCAGGGGT ATGAGTCCAGTTACCAGGGTGTGTTCCCTGTGAAGTGCAACCAGGACCGGTTCGTTGTGGAGGATATCGTGAGGTTCGGT TCGTCGTTCCGGTTCGGTTTGGAGGCAGGGTCGAAGCCAGAGCTTCTTCTGGCTATGAGCTGTTTGTGTAAGGGAAACAG AGAAGCGTTTCTGGTCTGCAATGGGTTCAAAGACAGCGAGTATATCACTCTGGCATTGGTTGCGAGGAAACTGGAATTGA ACACTGTGATTGTTCTGGAGCAAGAGGAGGAGCTTGACATTGTGATTGAAGTCAGCAACAAGCTCTGCATTCGTCCTGTG ATTGGGGTTCGAGCGAAGCTGAGGACTAAGCATTCTGGCCATTTTGGAGGAACTTCAGGGGATAAAGGGAAGTTCGGTTT GACAACTACCCAGATTCTTCGTGTGGTGAAGAAGCTTGAGCAAGTGGGCATGCTTGATTGCCTGCAATTGCTGCATTTCC ACATTGGTTCTCAGATTCCCCACACTGCATTGCTTTCTGATGGTTTGGGGGAAGCTGCACAGATTTACTGTGAACTGCTT CGACTGGGTGCCCAGATGCGAGTTCTTGATATTGGTGGTGGTTTGGGCATAGATTATGATGGTTCTAAGTCCACGGATTC TGATATCTCTGTTGGGTATAGTCTTGAAGAGTATGCTGCAGCTGTTGTTCACACGGTGAAGAATGTTTGTGACCGCAGGA ACGTGAGGCATCCTGTGATTTGCAGTGAGAGTGGCAGAGCCATTGTGTCTCATCATTCAGTGTTGATTTTCGAGGCTGTT GGTGCTAGTGGTAATAGAGGTAGAGACTCTGCATTGTCCACCATTGAATTGCAGTGTTTGGGAGAGGGGTTATCAGAGGA AGCTCTTGCTGATTATCAGAACATGTCTTCTGCAACCATTCGAGGCGAGTATGAAACCTGTTTGCGCTACGCGGAGCAGT TCAAGAAACGGTGCGTTGAACAGTTCAAGCAAGGGAGTTTGGGGATGGAACAGCTTGCAGCAGTGGATGGTTTGTGTGAT TTGATCACTGAGGCAATTGGGGTGAACGATCCAGTTCAAAAGTACCACATGAACCTCTCTGTGTTCACATCAATCCCTGA TTTCTGGGCATTCGAGCAACTTTTTCCCATAGTCCCAATTCATCGTCTCGATGAGAAGCCTACCGCGAAGGGGATTCTAT CAGATTTGACCTGCGACAGTGACGGGAAGATTGACAAGTTCATCGGTGGTGAGTCCAGCTTGCCGCTCCATGAATTGGAA GACGGGCACTACTACTTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTCGGTGGTGTTCACAACCTGTTTGGTGG CCCAAGCGTGGTGAGGGTGGTGCAGAGCGACGGGCCTCACGGTTTCGCGGTGACGCGTGCGGTGGCTGGGCCGTCTTGTG GGGATGTCCTCCGAGCAATGCAGCATCAGCCAGAGCTCATGTTCGAGACCCTCAAGCATCGCGTGCTGGAGTTTGATCAG GATGAAGTGAATGCTGCTGCAGTGGTGGCTAGCCTCGCGCGTTCCTTCGACAAAATGCCTTATCTGGTTGCGGCTAAGCC TTGTTGCTTCAATGCTGTTAGTAATGGTGGTTTTTACCACTGCTCCGGTGATGATTTCAGTGCTGATTCTGGTGGCGGCG GCGGCGGCAGCGGCAGCGCTGGTGGAGAAGAGGAGCATTGGTCTTATTGCTGTGCTTGA
Protein sequence (LotjaGi3g1v0514900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAMACGAAVLPLPGYTLAGDTDTSLPPPPPLTFSADDTWSPSLSSKLYRIDAWGGPYFTVNSAGNVSVRPHGAATLAHQ EIDLLKVVKKASDPKCCGGLGLQLPLVIRFPDALKNRVESLQSAFDCAIQSQGYESSYQGVFPVKCNQDRFVVEDIVRFG SSFRFGLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDSEYITLALVARKLELNTVIVLEQEEELDIVIEVSNKLCIRPV IGVRAKLRTKHSGHFGGTSGDKGKFGLTTTQILRVVKKLEQVGMLDCLQLLHFHIGSQIPHTALLSDGLGEAAQIYCELL RLGAQMRVLDIGGGLGIDYDGSKSTDSDISVGYSLEEYAAAVVHTVKNVCDRRNVRHPVICSESGRAIVSHHSVLIFEAV GASGNRGRDSALSTIELQCLGEGLSEEALADYQNMSSATIRGEYETCLRYAEQFKKRCVEQFKQGSLGMEQLAAVDGLCD LITEAIGVNDPVQKYHMNLSVFTSIPDFWAFEQLFPIVPIHRLDEKPTAKGILSDLTCDSDGKIDKFIGGESSLPLHELE DGHYYLGMFLGGAYEEALGGVHNLFGGPSVVRVVQSDGPHGFAVTRAVAGPSCGDVLRAMQHQPELMFETLKHRVLEFDQ DEVNAAAVVASLARSFDKMPYLVAAKPCCFNAVSNGGFYHCSGDDFSADSGGGGGGSGSAGGEEEHWSYCCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| PANTHER | 12 | 712 | 701 | 0.0 | ||
| PANTHER | 12 | 712 | 701 | 0.0 | – | |
| Phobius | 14 | 19 | 6 | - | – | |
| Phobius | 20 | 712 | 693 | - | – | |
| PIRSF | 29 | 670 | 642 | 2.1E-238 | ||
| TIGRFAM | 40 | 662 | 623 | 1.2E-227 | ||
| Gene3D | 49 | 595 | 547 | 9.1E-189 | ||
| CDD | 101 | 593 | 493 | 0.0 | ||
| PRINTS | 110 | 125 | 16 | 2.5E-104 | ||
| SUPERFAMILY | 110 | 392 | 283 | 8.04E-63 | ||
| Gene3D | 111 | 392 | 282 | 9.1E-189 | ||
| PRINTS | 134 | 148 | 15 | 2.5E-104 | ||
| Pfam | 137 | 390 | 254 | 2.4E-36 | ||
| PRINTS | 142 | 160 | 19 | 1.7E-21 | ||
| ProSitePatterns | 142 | 160 | 19 | - | ||
| PRINTS | 166 | 178 | 13 | 1.7E-21 | ||
| PRINTS | 192 | 207 | 16 | 2.5E-104 | ||
| PRINTS | 218 | 239 | 22 | 2.5E-104 | ||
| PRINTS | 242 | 264 | 23 | 2.5E-104 | ||
| PRINTS | 285 | 298 | 14 | 1.7E-21 | ||
| ProSitePatterns | 323 | 336 | 14 | - | ||
| PRINTS | 370 | 387 | 18 | 2.5E-104 | ||
| PRINTS | 380 | 399 | 20 | 1.7E-21 | ||
| Gene3D | 409 | 491 | 83 | 9.1E-189 | – | |
| SUPERFAMILY | 481 | 597 | 117 | 1.36E-6 | ||
| PRINTS | 498 | 519 | 22 | 2.5E-104 | ||
| PRINTS | 523 | 548 | 26 | 2.5E-104 | ||
| PRINTS | 572 | 585 | 14 | 1.7E-21 | ||
| PRINTS | 572 | 593 | 22 | 2.5E-104 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Arginine catabolic process | The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. | ||
| Biological process | Spermidine biosynthetic process | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. | ||
| Molecular function | Arginine decarboxylase activity | Catalysis of the reaction: L-arginine + H(+) = agmatine + CO(2). |
Expression pattern of LotjaGi3g1v0514900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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