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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000811
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.860s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0246349.1
n.a. Phosphorylase [Medicago truncatula] gi|357446731|ref|XP_003593641.1| chr0 127641998 127642363 -
3 domain predictions
2 GO terms
Lj0g3v0360239.1
n.a. PREDICTED: alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic-like [Glycine max] gi|356577161|ref|XP_003556696.1| chr0 189699151 189711240 -
4 domain predictions
2 GO terms
Lj1g3v2546230.1
n.a. Phosphorylase [Medicago truncatula] gi|357446731|ref|XP_003593641.1| chr1 29320060 29320308 -
3 domain predictions
2 GO terms
Lj2g3v1079510.1
n.a. PREDICTED: alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic-like [Glycine max] gi|356551144|ref|XP_003543938.1| chr2 17521296 17543356 +
5 domain predictions
2 GO terms
Lj6g3v2006830.1
n.a. PREDICTED: glycogen phosphorylase 1-like [Cicer arietinum] gi|502078074|ref|XP_004485832.1| chr6 23621147 23631898 +
4 domain predictions
2 GO terms
Lj6g3v2006830.2
n.a. PREDICTED: glycogen phosphorylase 1-like [Cicer arietinum] gi|502078074|ref|XP_004485832.1| chr6 23621147 23631898 +
5 domain predictions
2 GO terms
LotjaGi2g1v0265100.1
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|A0A151T017|A0A151T017_CAJCA Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi2g1v0265100 LjG1.1_chr2 73452017 73467863 +
4 domain predictions
2 GO terms
LotjaGi2g1v0265100.2
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|A0A151T017|A0A151T017_CAJCA Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi2g1v0265100 LjG1.1_chr2 73457229 73466367 +
4 domain predictions
2 GO terms
LotjaGi2g1v0265100.3
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|A0A151T017|A0A151T017_CAJCA Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi2g1v0265100 LjG1.1_chr2 73457230 73466367 +
4 domain predictions
2 GO terms
LotjaGi2g1v0265100.4
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|A0A151T017|A0A151T017_CAJCA Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi2g1v0265100 LjG1.1_chr2 73457260 73466367 +
4 domain predictions
2 GO terms
LotjaGi2g1v0265100.5
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|A0A151T017|A0A151T017_CAJCA Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi2g1v0265100 LjG1.1_chr2 73457531 73466367 +
4 domain predictions
2 GO terms
LotjaGi4g1v0088400.1
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53535|PHSL2_SOLTU Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|K7N100|K7N100_SOYBN Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi4g1v0088400 LjG1.1_chr4 11747509 11754250 -
4 domain predictions
2 GO terms
LotjaGi4g1v0088400.2
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53535|PHSL2_SOLTU Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|K7N100|K7N100_SOYBN Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi4g1v0088400 LjG1.1_chr4 11747509 11754312 -
4 domain predictions
2 GO terms
LotjaGi4g1v0088400.3
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G29320.1 Glycosyl transferase, family 35; Swiss-Prot: sp|P53535|PHSL2_SOLTU Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic; TrEMBL-Plants: tr|K7N100|K7N100_SOYBN Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi4g1v0088400 LjG1.1_chr4 11747509 11754318 -
4 domain predictions
2 GO terms
LotjaGi6g1v0134000.1
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G46970.1 alpha-glucan phosphorylase 2; Swiss-Prot: sp|P53537|PHSH_VICFA Alpha-glucan phosphorylase, H isozyme; TrEMBL-Plants: tr|A0A0B2PFG1|A0A0B2PFG1_GLYSO Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi6g1v0134000 LjG1.1_chr6 38685029 38692878 +
4 domain predictions
2 GO terms
LotjaGi6g1v0134000.2
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G46970.1 alpha-glucan phosphorylase 2; Swiss-Prot: sp|P53537|PHSH_VICFA Alpha-glucan phosphorylase, H isozyme; TrEMBL-Plants: tr|A0A0B2PFG1|A0A0B2PFG1_GLYSO Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi6g1v0134000 LjG1.1_chr6 38685057 38692494 +
4 domain predictions
2 GO terms
LotjaGi6g1v0328500.1
n.a. Alpha-1,4 glucan phosphorylase; TAIR: AT3G46970.1 alpha-glucan phosphorylase 2; Swiss-Prot: sp|Q00766|PHS1_DICDI Glycogen phosphorylase 1; TrEMBL-Plants: tr|V7BU77|V7BU77_PHAVU Alpha-1,4 glucan phosphorylase; Found in the gene: LotjaGi6g1v0328500 LjG1.1_chr6 64348592 64359598 +
3 domain predictions
2 GO terms