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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2006830 |
| Transcript ID | Lj6g3v2006830.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: glycogen phosphorylase 1-like [Cicer arietinum] gi|502078074|ref|XP_004485832.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 35 | 55 | 21 | – | – | |
| ProSiteProfiles | 73 | 154 | 82 | 9.071 | ||
| Gene3D | 77 | 137 | 61 | 3.40E-05 | – | |
| PANTHER | 129 | 980 | 852 | 0 | ||
| PANTHER | 129 | 980 | 852 | 0 | – | |
| SUPERFAMILY | 188 | 980 | 793 | 3.92E-285 | – | |
| Gene3D | 189 | 660 | 472 | 2.30E-207 | – | |
| TIGRFAM | 193 | 980 | 788 | 0 | ||
| CDD | 195 | 980 | 786 | 0 | ||
| Pfam | 279 | 980 | 702 | 1.00E-289 | ||
| Gene3D | 661 | 974 | 314 | 3.50E-117 | – | |
| ProSitePatterns | 839 | 851 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorylase activity | Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Glycogen phosphorylase activity | Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of Lj6g3v2006830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2006830.1, powered by CORGI.
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