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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000873
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 158 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.785s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0002229.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357458551|ref|XP_003599556.1| chr0 702402 708057 -
2 domain predictions
1 GO term
Lj0g3v0002239.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357458549|ref|XP_003599555.1| chr0 702895 708057 -
2 domain predictions
1 GO term
Lj0g3v0002899.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356523002|ref|XP_003530131.1| chr0 1047803 1064160 -
2 domain predictions
1 GO term
Lj0g3v0002899.2
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356523415|ref|XP_003530335.1| chr0 1047803 1065285 -
2 domain predictions
1 GO term
Lj0g3v0036919.1
n.a. PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] gi|356525251|ref|XP_003531240.1| chr0 11866167 11871059 +
2 domain predictions
1 GO term
Lj0g3v0036929.1
n.a. n.a. chr0 11866347 11871059 +
2 domain predictions
1 GO term
Lj0g3v0046889.1
n.a. Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357481423|ref|XP_003610997.1| chr0 15647749 15655874 -
2 domain predictions
1 GO term
Lj0g3v0062589.1
n.a. PREDICTED: probable acyl-activating enzyme 17, peroxisomal-like isoform X2 [Cicer arietinum] gi|502086856|ref|XP_004488348.1| chr0 21051171 21061398 +
2 domain predictions
1 GO term
Lj0g3v0083709.1
n.a. PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] gi|356500978|ref|XP_003519307.1| chr0 33255997 33256712 +
2 domain predictions
1 GO term
Lj0g3v0083719.1
n.a. PREDICTED: probable acyl-activating enzyme 6-like [Cicer arietinum] gi|502096476|ref|XP_004490749.1| chr0 33257208 33257520 +
2 domain predictions
1 GO term
Lj0g3v0112059.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357460691|ref|XP_003600627.1| chr0 48715873 48718235 -
2 domain predictions
1 GO term
Lj0g3v0165009.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cicer arietinum] gi|502082107|ref|XP_004487067.1| chr0 78255801 78257385 -
2 domain predictions
1 GO term
Lj0g3v0169949.1
n.a. PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like isoform X3 [Cicer arietinum] gi|502123992|ref|XP_004498339.1| chr0 81325812 81332856 +
2 domain predictions
1 GO term
Lj0g3v0173579.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356575070|ref|XP_003555665.1| chr0 83549281 83557312 -
2 domain predictions
1 GO term
Lj0g3v0188849.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357460691|ref|XP_003600627.1| chr0 92326879 92328662 -
2 domain predictions
1 GO term
Lj0g3v0205559.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 102262923 102270182 +
2 domain predictions
1 GO term
Lj0g3v0205569.1
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
1 GO term
Lj0g3v0205569.2
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
1 GO term
Lj0g3v0205569.3
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
1 GO term
Lj0g3v0251229.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356523415|ref|XP_003530335.1| chr0 130310851 130318869 -
2 domain predictions
1 GO term
Lj0g3v0262659.1
n.a. PREDICTED: acyl-CoA synthetase family member 4-like [Glycine max] gi|356506337|ref|XP_003521941.1| chr0 136189865 136191356 -
2 domain predictions
1 GO term
Lj0g3v0300119.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357481321|ref|XP_003610946.1| chr0 155892639 155893570 -
2 domain predictions
1 GO term
Lj0g3v0300139.1
n.a. PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] gi|356497397|ref|XP_003517547.1| chr0 155895732 155898107 -
2 domain predictions
1 GO term
Lj0g3v0306889.1
n.a. 4-coumarate:CoA ligase [Amorpha fruticosa] gi|17063848|gb|AAL35216.1| chr0 160217849 160222114 +
2 domain predictions
1 GO term
Lj0g3v0312949.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357517755|ref|XP_003629166.1| chr0 163419909 163422943 -
2 domain predictions
1 GO term
Lj0g3v0312949.2
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357517755|ref|XP_003629166.1| chr0 163419909 163427670 -
2 domain predictions
1 GO term
Lj0g3v0312959.1
n.a. 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|357517755|ref|XP_003629166.1| chr0 163426837 163427670 -
2 domain predictions
1 GO term
Lj0g3v0344549.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 9-like [Glycine max] gi|356508790|ref|XP_003523137.1| chr0 180790754 180794370 +
2 domain predictions
1 GO term
Lj0g3v0344559.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 9-like [Glycine max] gi|356508790|ref|XP_003523137.1| chr0 180790754 180794370 +
2 domain predictions
1 GO term
Lj1g3v0129860.1
n.a. 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi|351723189|ref|NP_001237270.1| chr1 1633708 1637930 -
2 domain predictions
1 GO term
Lj1g3v0814960.1
n.a. PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cicer arietinum] gi|502135825|ref|XP_004502465.1| chr1 10697557 10709681 +
2 domain predictions
1 GO term
Lj1g3v1386870.1
n.a. long-chain-fatty-acid--CoA ligase FadD [Octadecabacter antarcticus 307] gi|478176633|ref|YP_007697707.1| chr1 17079995 17081238 +
2 domain predictions
1 GO term
Lj1g3v3779380.1
n.a. 4-coumarate-coa ligase [Medicago truncatula] gi|357440909|ref|XP_003590732.1| chr1 43347458 43351751 +
2 domain predictions
1 GO term
Lj1g3v3833570.1
n.a. 4-coumarate-coa ligase [Medicago truncatula] gi|357440909|ref|XP_003590732.1| chr1 43403563 43407555 +
2 domain predictions
1 GO term
Lj1g3v3943740.1
n.a. PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] gi|356570289|ref|XP_003553322.1| chr1 46023996 46032696 +
2 domain predictions
1 GO term
Lj1g3v4833890.1
n.a. PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] gi|356505647|ref|XP_003521601.1| chr1 58577235 58589016 +
2 domain predictions
1 GO term
Lj1g3v4833900.1
n.a. n.a. chr1 58577235 58588863 +
2 domain predictions
1 GO term
Lj1g3v4836280.1
n.a. Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357511417|ref|XP_003625997.1| chr1 58649696 58652288 +
2 domain predictions
1 GO term
Lj2g3v0347270.1
n.a. PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like isoform X1 [Cicer arietinum] gi|502159682|ref|XP_004511496.1| chr2 5678566 5680798 -
2 domain predictions
1 GO term
Lj2g3v1536270.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 6-like [Glycine max] gi|356497603|ref|XP_003517649.1| chr2 24160356 24164266 +
2 domain predictions
1 GO term
Lj2g3v2088200.1
n.a. PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max] gi|356497309|ref|XP_003517503.1| chr2 31511774 31519468 -
2 domain predictions
1 GO term
Lj2g3v2100900.1
n.a. PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like isoform X1 [Cicer arietinum] gi|502159682|ref|XP_004511496.1| chr2 31738978 31743784 +
2 domain predictions
1 GO term
Lj2g3v2471490.1
n.a. PREDICTED: probable acyl-activating enzyme 6-like [Cicer arietinum] gi|502096474|ref|XP_004490748.1| chr2 34719372 34720223 -
2 domain predictions
1 GO term
Lj2g3v2473510.1
n.a. PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] gi|356500978|ref|XP_003519307.1| chr2 34728120 34730389 -
2 domain predictions
1 GO term
Lj3g3v1113010.1
n.a. 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|373432591|ref|NP_001243292.1| chr3 14858279 14868294 -
2 domain predictions
1 GO term
Lj3g3v2040010.1
n.a. 4-coumarate:CoA ligase [Amorpha fruticosa] gi|17063848|gb|AAL35216.1| chr3 26203808 26208381 +
2 domain predictions
1 GO term
Lj3g3v2312070.1
n.a. PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Glycine max] gi|356523048|ref|XP_003530154.1| chr3 28174708 28182719 +
2 domain predictions
1 GO term
Lj3g3v2484140.1
n.a. 4-coumarate-coa ligase [Medicago truncatula] gi|357463591|ref|XP_003602077.1| chr3 30671348 30673623 +
2 domain predictions
1 GO term
Lj3g3v2721410.1
n.a. Acetyl-coenzyme A synthetase [Medicago truncatula] gi|357514737|ref|XP_003627657.1| chr3 33398382 33405433 -
2 domain predictions
1 GO term
Lj3g3v2721410.2
n.a. Acetyl-coenzyme A synthetase [Medicago truncatula] gi|357514737|ref|XP_003627657.1| chr3 33398382 33405433 -
2 domain predictions
1 GO term