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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001377
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.404s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3597130.1
n.a. PREDICTED: 40S ribosomal protein S6-like [Glycine max] gi|356527286|ref|XP_003532242.1| chr1 41351293 41355945 +
4 domain predictions
3 GO terms
Lj1g3v3597130.2
n.a. ribosomal protein S6 [Glycine max] gi|351722412|ref|NP_001237243.1| chr1 41351293 41357796 +
4 domain predictions
3 GO terms
Lj4g3v0462750.1
n.a. PREDICTED: 40S ribosomal protein S6-like [Cicer arietinum] gi|502142694|ref|XP_004505074.1| chr4 6959465 6961674 +
4 domain predictions
3 GO terms
Lj6g3v2017540.1
n.a. PREDICTED: 40S ribosomal protein S6-like [Glycine max] gi|356521380|ref|XP_003529334.1| chr6 23820983 23823174 -
4 domain predictions
3 GO terms
LotjaGi1g1v0595400.1
n.a. 40S ribosomal protein S6; TAIR: AT5G10360.1 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|A0A0B2PGJ6|A0A0B2PGJ6_GLYSO 40S ribosomal protein S6; Found in the gene: LotjaGi1g1v0595400 LjG1.1_chr1 113506150 113512669 +
4 domain predictions
3 GO terms
LotjaGi1g1v0595400.2
n.a. 40S ribosomal protein S6; TAIR: AT5G10360.2 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|A0A0B2PGJ6|A0A0B2PGJ6_GLYSO 40S ribosomal protein S6; Found in the gene: LotjaGi1g1v0595400 LjG1.1_chr1 113506250 113510964 +
4 domain predictions
3 GO terms
LotjaGi4g1v0057900.1
n.a. 40S ribosomal protein S6; TAIR: AT5G10360.1 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|A0A0B2PGJ6|A0A0B2PGJ6_GLYSO 40S ribosomal protein S6; Found in the gene: LotjaGi4g1v0057900 LjG1.1_chr4 6984731 6988941 +
4 domain predictions
3 GO terms
LotjaGi4g1v0057900.2
n.a. 40S ribosomal protein S6; TAIR: AT5G10360.2 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|I1M090|I1M090_SOYBN 40S ribosomal protein S6; Found in the gene: LotjaGi4g1v0057900 LjG1.1_chr4 6984882 6987101 +
4 domain predictions
3 GO terms
LotjaGi6g1v0330100.1
n.a. 40S ribosomal protein S6; TAIR: AT5G10360.2 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|V7BQ82|V7BQ82_PHAVU 40S ribosomal protein S6; Found in the gene: LotjaGi6g1v0330100 LjG1.1_chr6 64539467 64541426 -
4 domain predictions
3 GO terms
LotjaGi6g1v0330100.2
n.a. 40S ribosomal protein S6; TAIR: AT5G10360.1 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|I3S397|I3S397_LOTJA 40S ribosomal protein S6; Found in the gene: LotjaGi6g1v0330100 LjG1.1_chr6 64539467 64541426 -
4 domain predictions
3 GO terms