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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0595400 |
| Transcript ID | LotjaGi1g1v0595400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S6; TAIR: AT5G10360.1 Ribosomal protein S6e; Swiss-Prot: sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6; TrEMBL-Plants: tr|A0A0B2PGJ6|A0A0B2PGJ6_GLYSO 40S ribosomal protein S6; Found in the gene: LotjaGi1g1v0595400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113506150..113512669) extracted from Lotus japonicus Gifu genome v1.2.
CCCTACTACTTACTTCTTACCGTGCGCATGATTTGAGTTTGGTGATCGCTCTCGGAGTCGGAGAGAGTTCGTTGCGGCGG TTGCAGTAGAACATTGCAGGATGAAGGTTCTCTTCTCCCGAAACCCTAATTGTTACTTCTCTGTTGATTTCTCGTTTTGC TTCGCAATTTCTCGTTGCTGATTTTTGTTTTGCAATTTTATCTTGTGCAGTTCAACATTGCAAATCCAACCACTGGGTGC CAGAAGAAGCTCGAGATTGACGATGATCTGAAACTGTAATCTCTTCACTCTTTTTTGTCGTCATTTTCATTGTGATGAAT GTGTATTGTGTCTTTGCTTAGAATTTACTTTTCTCGATTTTAGGATTTGAACCAATGGCTTGCATATAATTGTTTATGTT TATTCTGCATTTCTAGTATCAATAACAAGTAGCTTGTTTATGTGTATTCTTTGAAATTTATTTAATTTTTTTTTATTTGA ACAAGTAGCACTACTGATGTGCAAGGTGTAATGAACACTGATGTTAAGGTGGCAACAGTAGTTGAGATCGAGAAATAGTT TTGAGGGGGAAGAACAGTGGTTAATATTGTAGTAAGTAGTAACATCAGCACAGTTTCAAAGTAAAGTACTGCTGGCTCAC TTTTTCTTAGTGAAACGGGAAAGATTACTGAATCATGTCACTGAAAGACTAAGAGGCAAAGATGTGCTGTCATTGTAGAG GATGTAAGGTGGGAATTTGGTCATATTATGGGTCGTACATGAGTTGTAGTTGGATTTGGTGGATAACCTTAGGATATCTG GGATCCGGGGGAAGAGGATCAAGTTAGCCATTGTGAATAGTGATTTACATTTCATGTCTAAATTAAATTTTATAATGTGC ACTCCTAAAAGAGAATTTGAGAAAGTTGATTTTGTAGGCTGTATGGTATGATAGAAATAGAAGAGAAATAATGATATTGA CACTCTTTTCTCGATTGGTTGAATAGAAAGTGAGAAGAGAGAATATTCCTTTTATGTAAAATGACATTGTTACCATAAAT ATTAAAATATATAAAATTTGTAAGTAAGTATGAATGTATGATAATGATAGAGGGATAAAATGGGAAAGTGTGTGTAAATT TATACTCTCACTCATTTCTCCCAATCTATCTCTCACAAGCATACTGGACAAGAGTGATTAATTATCTCCTCCCTAACTTT CTCTTCTCTATCTTGTCAAATCACCCTCTACCAAATATAATGTAAAAGAAATGAAGGTTAATAAGTTATTTTTCTTATGT ACCTCAGAAAGTTGAGAACTGTAGGGGAGCACACCTGTCAGTTTGTCACAATAAAGCTCTGCCACTAGATGTCAACGTAA CTGGCTCAATTTGATTGAAATTTGTTGTTTTTCCCTAGAGAGGTCTATTGTGTTTTGGGACAACATGACTTTTCTGATTA TAATAATTTTGAATTTAAATTGCAGACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATTGGAGATGCACTTGGT GAGGTATGCTTTTTAGCTTGAGCCCATCTGTTCCAATTTTTTTTTTGAAAAACAACTTGTTGAATTTATATTCACCATTA TAAGTCTGCTGCCAACAGGAATTTAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGTTTCCCAATGAA GCAGGGAGTGCTGACCCCAGGTCGTGTTCGTCTCTTGCTTCACAGGGGTAGGTCTTTTCTGTAGCCTCCTTTTTTAGTTT GATGGAATCTCTTGCATTTTCTTTTTGGTCACTGTGAATGTCATTGGTCCAACTTACTTGATTTGCATTTGGCTGTGGCG CTGTGCCCTTATTTCGTGTTTTAAATCAGTTCTAATATCATCCCATACATTTTTTTTTTGTGAATTATTTCTTTTGTAAT AATAATAATATAAAGCTATTAACAGCTTCCGATTTACTGCTATCGCAGTGTTGAAACTTACGTTGTGGAGTTGTTTTTGC TTTGTTTCTTTTGCTGCTGTGTTTGCACCCAAATCATGGCAATTGGCACTAGTTGTGGTCGCTAGCTGAAACTTGGGGTT GGGGAGGTCAAACCTTTCTCCCCTCCCAATATTCTGTGTTGGAAACTAACACTATGTTTGGTAGAGGGTGATTGGAAGGG AGAGTTAGGGGAAAGATAGCGGATCACCCTTGTGTTTTATGCATGAGAGAGTTAGTGGAGAGAGATGGGGGAGAGTTGAT TTCTTATTTCACTTCCCTAATCCCTCTACATTATCCTACCACTTTATGAATATTTATATTTTTCAGATAAAATTGACAAA AATCAATCTCTTTCCACTCTCTATTCAACCAAACGAGAGGAGAGAGATTCCACATTATTCTTTCTCTTCTCTTTCTCTTC TATCACTATCATACCAAACAACCTACAGAATTTACTGTATTTCTCACATCCTTCTCTCTACTCATCTTCTCTATTTCTCT CCTCAACCAAACAAAGCATAACGTTTTTTGTTATTTTTTGCAATTTCAACCCCCTTTTTACATCATATCAGCCATTAGGG TTCCAAGCCTTGTTCCAAGCTTTACCCACACCACCCACTGTGTTCTCTCTGTTTTGATGCGATTCATCAGTGCCCCTGCA TTCTGTGTTGTTTCTGACCAATTTCTGGGATTTCTTGCTGAGTTCGCACACCTATTTTGTGTTGGTTATTCTGATGTTCT TTACTCTCTGTTCTTTTGAGTAGAAGAAAAATCCGCACCTTTCCTGTATCTCTGTTCTGTTGCTCACCCCTCTTGTGTTC TCCTAATTTTGTTTTACCTATCACCCTCTTTTGTACCTCTATGTTCCGTAGTGATTGTTATTCTTTTTTACCCTTGTTCT GTGCAGCCATAGTATCATAAACTCAGGCTTAAGCTTATTCATTCCCTTACTTTTGTTATAGACTTGTGTGTTCAGCTTTA GAGTATGACTTCTTAAGTATGAATATGTCTTTTAATTTTTTTATTTTATAGTTTTGAGCATTTTTATATTCTGTATGTAA TTTTTTATTTTCTAACATGTATTACAGTCTTCAGTATCATGTCCATCCTGTTGCCTGCTATCATGTTAGATCAGTTCGGG GTTGGCTGTTCTACGCCATTGTCCAGGATTGACTACTGACACTACAGCCACTTAACATTGTTAATTTGGTTTTCATTGGT GACTTTTACAGGGACACCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAATCTGTTCGTGGGTGTA TTGTCAGTCCAGATCTCTCTGTTTTGAACTTGGTCATTGTGAAGAAGGGTGAGAATGATTTACCAGGTCTGACCGACACT GAGAAGCCTAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCCAAAGAGGATGATGTGAG GAAGTATGTCAATACATACCGTCGGACATTTACAACAAAAGCTGGTAAACCTTCTGGTGCTTGTAAATTTTCTGTTCAAT TGTCATTGGGTGCTTGATTAAAAATATGGTCCAAGATGTTGAAAAGTATTACAGTAATCAGAGAAAAAATCTAAATTTTA ACTTTATCTAACATGTAATTTATACTTGTTATAAAGTTAATATTTATTAGTGCTAATCTTTGATGGTGACACAGTTCTCA CATAGCTGTTTTATCTGTTAATGTTAGTCCAAAATCAGTACTGTCGGTATTTTTGGTTCATGACTTCATGCATGTATTGT TTTGCAATATTCCTAGTATTTTTCTTTTTAGTTATATCGCAAAATTACTTGGAAAAATAAAGATGGAGAATATATAAAAT GAGGAATTCTATTATTTTGCCACACATGATACATAACTTGGTCCACCATTTGTAATAGTGACAACTACATAATTCTCAAT TAAAAATACTTAATAGACATAAAGCTAAAGAGGTAAATGCTTACTTAGTGGTTACATGATAAAGAATGATAACCCTTAAA CAAACATAATGCTCCTTAATGCATACTAACTCATGACAATTCAAATTTGTAGGTTCTTGCATTCTTACTAAAAGCATTTT TTTATTGATTTTATTGATAATTTGGTTTTCATTAGAGCCTATATATTTGTTTAGTTCACATAGCTAACACCACATTTGGG AAGGGCTTGTGTTGTTGTTGCTTGATTTTACTGCCTGGAAAATGCATATGGGGTTCAGTTTGGTAGATCCTCCGAATAGG CGTAAAAAAATTCATGGATGAGTTTTTATTGATATTGAAAATTATATACAATGTACCCAATCCCCTTCCTGTTGATTGCC CTTAATTGTTAGGAGATATCTAGCTTATGCGTGCTTGTTCAGAAACCATACCACACATTCTACTCATTCAAATGTAGACC CTGTGTTTTGCATATTTATGATGTAATTGGGATGAGAAACAGAACCCTTGGAATCAAATGAATTATTTTAGGCATACTTT GGTTATGGTGCCTTAGGTACATCACATGAAGTTGGAATAGTATTGGCGTACTTTGCAATGAATTATAGTTTGAACGTAAT TGGTATTTGGTTGCAGGTAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCTCTTACACTCCAGAGAAA GCGCGCAAGGATTGCTGACAAGAAGAAGAGAATCGCCAAGGCAAAATCAGAGGCAGCCGAGTACCAGAAGCTCCTCGCCT CCAGGTTGAAGGAGCAGAGAGAGCGTCGCAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTGTCCAGTGTTTCTAAGCCA GCTGTTGCTATATAGATATATGGTAAAGTTTAAACATCATTGTAGTTTTTTGTATTTTTTGTTTTTCAAGGTGTCTGTTA TGACAGACAGTTGAGATTTTGTTATATCTTAAATACATCGATTTTCTTAATATAGTGTTGCTTATTGAATTATTTTTTAA CTAGTTGCAATATGTATTAGTAATTTCTTGGGTTACCCCGTAGGCCTCTTACCTGCATTTTTTCCATCTCGAGATTAATA CTCCTGTTTGCATAATTCACAATCTGAAAACATATTTAGAAGTAATAGTTTGTTTCATTGAATTTGTCTCACCGACTTTA ATGCGGGTCATTGCGATCAATGATAATCCAAGCACGTTTAAACGGAATTGAAATCTGGGCTTTGTAATTTTTCATAGAAA TCAGCTTCCATTGATGCATCTGTGAGCTTGAGTCTTGACCTTTCTGCTTTTTAATTTCCCAATCTTGCTTTCACCCGTAT GGATTACTTTTTGAGTGTTTCAGTCACCATCCACATCCTTGTTCATTTGCCACCTTTAGCCATGATCACCAATGAAGCCC TCCCTCTTTTCAAACTCTACAAAGCTCTTCAGCTCCACTGTTCTCTGCGAAGATTTTCATCTTTCTAGGGTAATGCATTA AATTAGTGGAGGCCAGCTGTATTCTCTTAATATTCTTTGACCGTTTACACTCATTCTTCTTCTTTGTTTAGTGTTTTTTT TTTCGTCAAGATTGTTTTCTAGTATTTCAAATAATGTGTAGGGATATTTTAGTGATCAAGTTAAGAAGTTGTGTTTTCGA TTTTGGACTTAGGTAGGTGGAAGTCTACAGAGAAGTCTCTGGTGTGGCGGGGAGGAGCATTCTTGTGTGAGGGCGGTGCA ACTGGTGGTGGGGATGAAGAAGAAAGGAAGGGGTGGGGCGATGTGATGACTTGGTGCCATGTAACGTGTCAATGATGATG TGGCTCTTTATTTGCCACATAATCAGTTAAGGGACTAAAACATCTCAATTTAAAATAAGAAGAGACTAAAACAACAAAAA ATAGTGTATAAGACCATAACCAAAAACTCATAAATATAAGCATCACAATTCACAAACATATTTACAAAGCCCATATTAAA ATGGTTATCAAAAATAAGTTTTTGGTCGGTCAGTCCATCATTGGAGAAATTTTAGGTTTTCATTCCCATGATGATTAGGG AAATGATTGACTTTGATCATCGCCTGAGTGTGAACTTCGGTGGGACAGTTTCGGTGCAGTTGGATAGTATTCATTGGATA TATTAATTTTAAAATTGAACAGTTGAGATTGATTAGAGTTAAAATGTTAATTTACAAAAATATCCATTGCTCATATTACC CATTTACCCCACCATTCTCATATGAGGTTCCATTTCATCCCTACCTCTATCACCATGCTGGTTGCTTGGCTACTGTTTCT TAGATTAGGAGTGGTCAGGTCTGCTTGGCTCGTTGTCTCTGGTTTCAGTTTTGGTGTGGGTGGCGCTGTCATGGACATTG TGGGGGCGTTGGAAAGCTTCTATGGCCTATGGGGTTGCTGCTACCTTCGTTGCGTGATTGAATTGTAATTTGTGATTTTA AGACTTTTCTACCCTATTTTGTTCCTGTTTTCTTTTCATATGTAGTGTGCGTTTTCCCATCTTTTGTTTGCTGTGTTTCT TCTCATGTAACCATATTAATTCTTAAATATATGTAGCTAG
CDS sequence (LotjaGi1g1v0595400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCAACATTGCAAATCCAACCACTGGGTGCCAGAAGAAGCTCGAGATTGACGATGATCTGAAACTACGAGCATT TTGGGACAAGAGGATCTCACAGGAGGTCATTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATCACTG GAGGTTGTGACAAACAAGGTTTCCCAATGAAGCAGGGAGTGCTGACCCCAGGTCGTGTTCGTCTCTTGCTTCACAGGGGG ACACCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAATCTGTTCGTGGGTGTATTGTCAGTCCAGA TCTCTCTGTTTTGAACTTGGTCATTGTGAAGAAGGGTGAGAATGATTTACCAGGTCTGACCGACACTGAGAAGCCTAGGA TGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCCAAAGAGGATGATGTGAGGAAGTATGTCAAT ACATACCGTCGGACATTTACAACAAAAGCTGGTAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCTCT TACACTCCAGAGAAAGCGCGCAAGGATTGCTGACAAGAAGAAGAGAATCGCCAAGGCAAAATCAGAGGCAGCCGAGTACC AGAAGCTCCTCGCCTCCAGGTTGAAGGAGCAGAGAGAGCGTCGCAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTGTCC AGTGTTTCTAAGCCAGCTGTTGCTATATAG
Protein sequence (LotjaGi1g1v0595400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVIGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRG TPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVN TYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLS SVSKPAVAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 248 | 248 | 2.6E-157 | – | |
| SMART | 1 | 128 | 128 | 8.5E-82 | ||
| Pfam | 1 | 128 | 128 | 2.4E-55 | ||
| PANTHER | 1 | 248 | 248 | 2.6E-157 | ||
| PIRSF | 1 | 248 | 248 | 3.4E-118 | ||
| ProSitePatterns | 52 | 63 | 12 | - | ||
| Coils | 189 | 216 | 28 | - | – | |
| MobiDBLite | 219 | 249 | 31 | - | – | |
| MobiDBLite | 219 | 237 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0595400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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