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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002495
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 140 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.910s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0012429.1
n.a. PREDICTED: probable galacturonosyltransferase 11-like isoform 1 [Glycine max] gi|356516879|ref|XP_003527120.1| chr0 4711656 4715821 -
2 domain predictions
1 GO term
Lj0g3v0036679.1
n.a. Plant glycogenin-like starch initiation protein 6 isoform 2 [Theobroma cacao] gi|508718936|gb|EOY10833.1| chr0 11737660 11738534 -
2 domain predictions
1 GO term
Lj0g3v0172249.1
n.a. Glycosyltransferase [Medicago truncatula] gi|358343636|ref|XP_003635905.1| chr0 82689250 82691956 +
2 domain predictions
1 GO term
Lj0g3v0199279.1
n.a. PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1 [Cicer arietinum] gi|502157497|ref|XP_004510897.1| chr0 97657541 97664656 +
2 domain predictions
1 GO term
Lj0g3v0199279.2
n.a. PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1 [Cicer arietinum] gi|502157497|ref|XP_004510897.1| chr0 97657541 97663260 +
2 domain predictions
1 GO term
Lj0g3v0237719.1
n.a. PREDICTED: probable galacturonosyltransferase-like 3-like [Glycine max] gi|356499719|ref|XP_003518684.1| chr0 123243875 123245746 -
2 domain predictions
1 GO term
Lj0g3v0299799.1
n.a. Plant glycogenin-like starch initiation protein 2 isoform 1 [Theobroma cacao] gi|508724729|gb|EOY16626.1| chr0 155750839 155756089 -
2 domain predictions
1 GO term
Lj0g3v0316579.1
n.a. similar to galacturonosyltransferase 10 [Lupinus angustifolius] gi|440583703|emb|CCH47207.1| chr0 165389031 165392493 +
2 domain predictions
1 GO term
Lj0g3v0317089.1
n.a. PREDICTED: probable galacturonosyltransferase 13-like [Glycine max] gi|356551114|ref|XP_003543923.1| chr0 165619860 165623541 +
2 domain predictions
1 GO term
Lj0g3v0317089.2
n.a. PREDICTED: probable galacturonosyltransferase 13-like [Glycine max] gi|356551114|ref|XP_003543923.1| chr0 165619860 165623541 +
2 domain predictions
1 GO term
Lj0g3v0358439.1
n.a. PREDICTED: probable galacturonosyltransferase 4-like [Cicer arietinum] gi|502126533|ref|XP_004499343.1| chr0 188691117 188697170 +
2 domain predictions
1 GO term
Lj0g3v0359169.1
n.a. PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] gi|356549823|ref|XP_003543290.1| chr0 189069750 189073291 +
2 domain predictions
1 GO term
Lj1g3v1300580.1
n.a. PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Cicer arietinum] gi|502136977|ref|XP_004502919.1| chr1 15474813 15485195 -
2 domain predictions
1 GO term
Lj1g3v2580640.1
n.a. PREDICTED: probable galacturonosyltransferase 7-like, partial [Cicer arietinum] gi|502104738|ref|XP_004492632.1| chr1 29534982 29544055 -
2 domain predictions
1 GO term
Lj1g3v2580640.2
n.a. PREDICTED: probable galacturonosyltransferase 7-like, partial [Cicer arietinum] gi|502104738|ref|XP_004492632.1| chr1 29534982 29544055 -
2 domain predictions
1 GO term
Lj1g3v2580640.3
n.a. PREDICTED: probable galacturonosyltransferase 7-like, partial [Cicer arietinum] gi|502104738|ref|XP_004492632.1| chr1 29534982 29544055 -
2 domain predictions
1 GO term
Lj1g3v2596960.1
n.a. PREDICTED: alpha-1,4-galacturonosyltransferase 1-like [Glycine max] gi|356530121|ref|XP_003533632.1| chr1 29975934 29981323 -
2 domain predictions
1 GO term
Lj1g3v2996680.1
n.a. PREDICTED: probable galacturonosyltransferase 14-like [Cicer arietinum] gi|502101819|ref|XP_004491881.1| chr1 34146058 34153964 -
2 domain predictions
1 GO term
Lj1g3v3580460.1
n.a. PREDICTED: galacturonosyltransferase 8-like [Glycine max] gi|356567810|ref|XP_003552108.1| chr1 41052065 41058691 +
2 domain predictions
1 GO term
Lj1g3v3848500.1
n.a. Glycogenin-1 [Medicago truncatula] gi|357441423|ref|XP_003590989.1| chr1 44318185 44325094 +
2 domain predictions
1 GO term
Lj1g3v4451570.1
n.a. PREDICTED: probable galacturonosyltransferase 6-like isoform X1 [Cicer arietinum] gi|502109852|ref|XP_004493742.1| chr1 52257698 52264083 -
2 domain predictions
1 GO term
Lj1g3v4451570.2
n.a. PREDICTED: probable galacturonosyltransferase 6-like isoform X4 [Cicer arietinum] gi|502109865|ref|XP_004493745.1| chr1 52257698 52264083 -
2 domain predictions
1 GO term
Lj1g3v4451570.3
n.a. PREDICTED: probable galacturonosyltransferase 6-like [Glycine max] gi|356504981|ref|XP_003521271.1| chr1 52257698 52263072 -
2 domain predictions
1 GO term
Lj1g3v4790770.1
n.a. galactinol synthase [Ammopiptanthus nanus] gi|294845786|gb|ADF43063.1| chr1 57733751 57735759 +
2 domain predictions
1 GO term
Lj1g3v4831850.1
n.a. Galactinol synthase [Medicago truncatula] gi|357511433|ref|XP_003626005.1| chr1 58554049 58569918 -
2 domain predictions
1 GO term
Lj1g3v4831850.4
n.a. Galactinol synthase [Medicago truncatula] gi|357511433|ref|XP_003626005.1| chr1 58554049 58568626 -
2 domain predictions
1 GO term
Lj1g3v4864270.1
n.a. Galacturonosyltransferase-like 7 isoform 1 [Theobroma cacao] gi|508703298|gb|EOX95194.1| chr1 58978852 58979981 +
2 domain predictions
1 GO term
Lj2g3v1022330.1
n.a. PREDICTED: probable galacturonosyltransferase-like 9-like [Glycine max] gi|356572000|ref|XP_003554158.1| chr2 16023285 16024880 -
2 domain predictions
1 GO term
Lj2g3v1069430.1
n.a. glycosyltransferase [Populus trichocarpa] gi|224141469|ref|XP_002324094.1| chr2 17459785 17462104 -
2 domain predictions
1 GO term
Lj2g3v1365970.1
n.a. PREDICTED: probable galacturonosyltransferase-like 9-like [Glycine max] gi|356501962|ref|XP_003519792.1| chr2 21442259 21444363 +
2 domain predictions
1 GO term
Lj2g3v1816230.1
n.a. PREDICTED: probable galacturonosyltransferase-like 1-like [Cicer arietinum] gi|502153151|ref|XP_004509235.1| chr2 27347704 27348423 +
2 domain predictions
1 GO term
Lj2g3v3246870.1
n.a. PREDICTED: probable galacturonosyltransferase 3-like [Glycine max] gi|356513975|ref|XP_003525683.1| chr2 41556793 41560607 -
2 domain predictions
1 GO term
Lj3g3v1545550.1
n.a. PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] gi|356549823|ref|XP_003543290.1| chr3 19819800 19823564 +
2 domain predictions
1 GO term
Lj3g3v2769450.1
n.a. Glycosyl transferase protein A [Medicago truncatula] gi|357446915|ref|XP_003593733.1| chr3 34141448 34146820 +
2 domain predictions
1 GO term
Lj4g3v0094920.1
n.a. PREDICTED: probable galacturonosyltransferase 4-like [Cicer arietinum] gi|502126533|ref|XP_004499343.1| chr4 741888 749701 -
2 domain predictions
1 GO term
Lj4g3v0924530.1
n.a. PREDICTED: probable galacturonosyltransferase-like 1-like [Cicer arietinum] gi|502153151|ref|XP_004509235.1| chr4 13652792 13654849 -
2 domain predictions
1 GO term
Lj4g3v1736150.1
n.a. PREDICTED: probable galacturonosyltransferase 11-like [Glycine max] gi|356562646|ref|XP_003549580.1| chr4 24936772 24940686 +
2 domain predictions
1 GO term
Lj4g3v3113840.1
n.a. PREDICTED: probable galacturonosyltransferase-like 4-like [Cicer arietinum] gi|502151236|ref|XP_004508341.1| chr4 41792985 41794685 +
2 domain predictions
1 GO term
Lj5g3v0084010.1
n.a. PREDICTED: probable galacturonosyltransferase-like 1-like [Glycine max] gi|356519066|ref|XP_003528195.1| chr5 477805 480334 -
2 domain predictions
1 GO term
Lj5g3v0290470.1
n.a. PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like isoform X1 [Cicer arietinum] gi|502125781|ref|XP_004499061.1| chr5 2499654 2504450 -
2 domain predictions
1 GO term
Lj5g3v1359290.1
n.a. Glycogenin-1 [Medicago truncatula] gi|357441423|ref|XP_003590989.1| chr5 20760028 20764709 +
2 domain predictions
1 GO term
Lj5g3v1494650.1
n.a. Glycogenin-1 [Medicago truncatula] gi|357441659|ref|XP_003591107.1| chr5 21663543 21666014 +
2 domain predictions
1 GO term
Lj5g3v1530100.1
n.a. galactinol synthase [Glycine max] gi|351722883|ref|NP_001238027.1| chr5 22294769 22296219 +
2 domain predictions
1 GO term
Lj5g3v1696790.1
n.a. PREDICTED: probable galacturonosyltransferase-like 4-like [Cicer arietinum] gi|502118034|ref|XP_004496068.1| chr5 24069224 24070410 +
2 domain predictions
1 GO term
Lj6g3v0925730.1
n.a. PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] gi|356526995|ref|XP_003532100.1| chr6 9747818 9755098 -
2 domain predictions
1 GO term
Lj6g3v1705050.1
n.a. Galacturonosyltransferase [Medicago truncatula] gi|357448171|ref|XP_003594361.1| chr6 19214968 19219299 -
2 domain predictions
1 GO term
Lj6g3v2274300.1
n.a. PREDICTED: LOW QUALITY PROTEIN: UDP-glucose:glycoprotein glucosyltransferase-like [Cicer arietinum] gi|502076910|ref|XP_004485494.1| chr6 26371649 26412853 -
2 domain predictions
1 GO term
Lj6g3v2274300.3
n.a. PREDICTED: LOW QUALITY PROTEIN: UDP-glucose:glycoprotein glucosyltransferase-like [Cicer arietinum] gi|502076910|ref|XP_004485494.1| chr6 26374944 26412853 -
2 domain predictions
1 GO term
LotjaGi1g1v0020200.1
n.a. Hexosyltransferase; TAIR: AT4G38270.1 galacturonosyltransferase 3; Swiss-Prot: sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3; TrEMBL-Plants: tr|A0A0L9UHZ9|A0A0L9UHZ9_PHAAN Hexosyltransferase; Found in the gene: LotjaGi1g1v0020200 LjG1.1_chr1 2491970 2496085 +
2 domain predictions
1 GO term
LotjaGi1g1v0020200.2
n.a. Hexosyltransferase; TAIR: AT4G38270.1 galacturonosyltransferase 3; Swiss-Prot: sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3; TrEMBL-Plants: tr|A0A0L9UHZ9|A0A0L9UHZ9_PHAAN Hexosyltransferase; Found in the gene: LotjaGi1g1v0020200 LjG1.1_chr1 2492718 2495462 +
2 domain predictions
1 GO term