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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0299799 |
| Transcript ID | Lj0g3v0299799.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Plant glycogenin-like starch initiation protein 2 isoform 1 [Theobroma cacao] gi|508724729|gb|EOY16626.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 57 | 57 | – | – | |
| MobiDBLite | 1 | 33 | 33 | – | – | |
| TMHMM | 58 | 77 | 20 | – | – | |
| Phobius | 58 | 78 | 21 | – | – | |
| Phobius | 79 | 645 | 567 | – | – | |
| PANTHER | 215 | 635 | 421 | 0 | ||
| PANTHER | 215 | 635 | 421 | 0 | – | |
| Gene3D | 309 | 564 | 256 | 3.00E-69 | ||
| SUPERFAMILY | 311 | 561 | 251 | 1.83E-47 | ||
| CDD | 311 | 556 | 246 | 1.28E-74 | – | |
| Pfam | 317 | 421 | 105 | 5.10E-09 | ||
| MobiDBLite | 626 | 645 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi apparatus | A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. | ||
| Biological process | Plant-type secondary cell wall biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. | ||
| Molecular function | Glucuronosyltransferase activity | Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside. | ||
| Molecular function | Transferase activity, transferring glycosyl groups | Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). | ||
| Biological process | Xylan biosynthetic process | The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. |
Expression pattern of Lj0g3v0299799.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0299799.1, powered by CORGI.
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