Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002938
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 44 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.623s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062999.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502160849|ref|XP_004511928.1| chr0 21255660 21261996 -
2 domain predictions
1 GO term
Lj0g3v0118129.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max] gi|356536384|ref|XP_003536718.1| chr0 52207114 52209982 +
2 domain predictions
1 GO term
Lj0g3v0118149.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max] gi|356536384|ref|XP_003536718.1| chr0 52210391 52210884 +
2 domain predictions
1 GO term
Lj0g3v0267429.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356569981|ref|XP_003553171.1| chr0 138558838 138563099 +
2 domain predictions
1 GO term
Lj0g3v0267429.4
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356569981|ref|XP_003553171.1| chr0 138558838 138563099 +
2 domain predictions
1 GO term
Lj0g3v0294379.1
n.a. PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like isoform X1 [Cicer arietinum] gi|502103130|ref|XP_004492209.1| chr0 152967226 152973346 -
2 domain predictions
1 GO term
Lj0g3v0294619.2
n.a. PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like isoform X1 [Cicer arietinum] gi|502103130|ref|XP_004492209.1| chr0 153114410 153124085 +
2 domain predictions
1 GO term
Lj0g3v0298799.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1| chr0 155266521 155268464 +
2 domain predictions
1 GO term
Lj0g3v0362799.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356534423|ref|XP_003535754.1| chr0 191328981 191331486 +
2 domain predictions
1 GO term
Lj2g3v1874610.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502152894|ref|XP_004509142.1| chr2 27923785 27930781 -
2 domain predictions
1 GO term
Lj2g3v1989110.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356495579|ref|XP_003516652.1| chr2 29749889 29753994 +
2 domain predictions
1 GO term
Lj2g3v1989110.2
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356495579|ref|XP_003516652.1| chr2 29749889 29753994 +
2 domain predictions
1 GO term
Lj2g3v2971720.1
n.a. Geranylgeranyl reductase [Medicago truncatula] gi|357493579|ref|XP_003617078.1| chr2 38391366 38392446 -
2 domain predictions
1 GO term
Lj3g3v0463700.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356531543|ref|XP_003534337.1| chr3 5338168 5341874 -
2 domain predictions
1 GO term
Lj3g3v0463700.2
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356531543|ref|XP_003534337.1| chr3 5338168 5340576 -
2 domain predictions
1 GO term
Lj3g3v0718330.1
n.a. CCP [Medicago truncatula] gi|357463063|ref|XP_003601813.1| chr3 7805472 7810806 +
2 domain predictions
1 GO term
Lj3g3v3752100.1
n.a. PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Glycine max] gi|356529899|ref|XP_003533524.1| chr3 45354532 45355027 +
2 domain predictions
1 GO term
Lj3g3v3752110.1
n.a. PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Glycine max] gi|356529899|ref|XP_003533524.1| chr3 45356106 45356651 +
2 domain predictions
1 GO term
Lj4g3v0282260.1
n.a. Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula] gi|357450967|ref|XP_003595760.1| chr4 3391476 3393214 -
2 domain predictions
1 GO term
Lj4g3v0282270.1
n.a. n.a. chr4 3391693 3393214 -
2 domain predictions
1 GO term
Lj5g3v0539950.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Cicer arietinum] gi|502165168|ref|XP_004513450.1| chr5 6441305 6444276 +
2 domain predictions
1 GO term
Lj5g3v2244890.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max] gi|356536384|ref|XP_003536718.1| chr5 32541798 32543758 -
2 domain predictions
1 GO term
LotjaGi1g1v0057100.1
n.a. Geranylgeranyl reductase; TAIR: AT1G74470.1 Pyridine nucleotide-disulfide oxidoreductase family protein; Swiss-Prot: sp|Q9ZS34|CHLP_TOBAC Geranylgeranyl diphosphate reductase, chloroplastic; TrEMBL-Plants: tr|G7K2X2|G7K2X2_MEDTR Pyridine nucleotide-disulfide oxidoreductase; Found in the gene: LotjaGi1g1v0057100 LjG1.1_chr1 7980406 7986739 -
2 domain predictions
1 GO term
LotjaGi1g1v0594000.1
n.a. Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TAIR: AT3G24200.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6DF46|COQ6_XENTR Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TrEMBL-Plants: tr|V7B491|V7B491_PHAVU Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; Found in the gene: LotjaGi1g1v0594000 LjG1.1_chr1 113392794 113402251 -
2 domain predictions
1 GO term
LotjaGi1g1v0594000.2
n.a. Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TAIR: AT3G24200.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q9Y2Z9|COQ6_HUMAN Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TrEMBL-Plants: tr|A0A0L9U4M4|A0A0L9U4M4_PHAAN Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; Found in the gene: LotjaGi1g1v0594000 LjG1.1_chr1 113393142 113394446 -
2 domain predictions
1 GO term
LotjaGi2g1v0401800.1
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1LHE5|I1LHE5_SOYBN Zeaxanthin epoxidase, chloroplastic; Found in the gene: LotjaGi2g1v0401800 LjG1.1_chr2 89908692 89915572 -
2 domain predictions
1 GO term
LotjaGi2g1v0420100.1
n.a. Monooxygenase, FAD-binding protein; TAIR: AT2G35660.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6F6Y2|HPXO_ACIAD FAD-dependent urate hydroxylase; TrEMBL-Plants: tr|V7CH14|V7CH14_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0420100 LjG1.1_chr2 91822322 91826697 +
2 domain predictions
1 GO term
LotjaGi2g1v0420100.2
n.a. Monooxygenase, FAD-binding protein; TAIR: AT2G35660.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|C3VEQ2|ZEP_ONCHC Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UQG8|A0A0L9UQG8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0420100 LjG1.1_chr2 91822322 91826697 +
2 domain predictions
1 GO term
LotjaGi2g1v0420100.3
n.a. Monooxygenase, FAD-binding protein; TAIR: AT2G35660.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6F6Y2|HPXO_ACIAD FAD-dependent urate hydroxylase; TrEMBL-Plants: tr|V7CH14|V7CH14_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0420100 LjG1.1_chr2 91822561 91825114 +
2 domain predictions
1 GO term
LotjaGi2g1v0420100.4
n.a. Monooxygenase, FAD-binding protein; TAIR: AT2G35660.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|C3VEQ2|ZEP_ONCHC Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UQG8|A0A0L9UQG8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0420100 LjG1.1_chr2 91823779 91825114 +
2 domain predictions
1 GO term
LotjaGi3g1v0056900.1
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151REJ6|A0A151REJ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0056900 LjG1.1_chr3 5921922 5925890 -
2 domain predictions
1 GO term
LotjaGi3g1v0056900.2
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151REJ6|A0A151REJ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0056900 LjG1.1_chr3 5921936 5926232 -
2 domain predictions
1 GO term
LotjaGi3g1v0056900.3
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151REJ6|A0A151REJ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0056900 LjG1.1_chr3 5921936 5926232 -
2 domain predictions
1 GO term
LotjaGi3g1v0056900.4
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151REJ6|A0A151REJ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0056900 LjG1.1_chr3 5922201 5925815 -
2 domain predictions
1 GO term
LotjaGi3g1v0056900.5
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1KZP8|I1KZP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0056900 LjG1.1_chr3 5922201 5925815 -
2 domain predictions
1 GO term
LotjaGi3g1v0089000.1
n.a. Monooxygenase; TAIR: AT1G24340.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|P42534|HYDL_STRCO Putative polyketide hydroxylase; TrEMBL-Plants: tr|G7JC21|G7JC21_MEDTR FAD/NAD(P)-binding oxidoreductase family protein; Found in the gene: LotjaGi3g1v0089000 LjG1.1_chr3 10064220 10072005 -
2 domain predictions
1 GO term
LotjaGi3g1v0554900.1
n.a. 3-hydroxybenzoate 6-hydroxylase; TAIR: AT4G15760.1 monooxygenase 1; Swiss-Prot: sp|Q672V4|ATMM_ASPFL FAD-dependent monooxygenase atmM; TrEMBL-Plants: tr|K7LS90|K7LS90_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0554900 LjG1.1_chr3 97253607 97256103 +
2 domain predictions
1 GO term
LotjaGi4g1v0105000.1
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1MVX7|I1MVX7_SOYBN Zeaxanthin epoxidase, chloroplastic; Found in the gene: LotjaGi4g1v0105000 LjG1.1_chr4 14613799 14621834 +
2 domain predictions
1 GO term
LotjaGi5g1v0061700.1
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G11330.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|P86491|6HN3M_PSEFL 6-hydroxynicotinate 3-monooxygenase; TrEMBL-Plants: tr|A0A151TZF4|A0A151TZF4_CAJCA 3-hydroxybenzoate 6-hydroxylase; Found in the gene: LotjaGi5g1v0061700 LjG1.1_chr5 10316467 10319556 +
2 domain predictions
1 GO term
LotjaGi5g1v0104700.1
n.a. Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TAIR: AT3G24200.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6DF46|COQ6_XENTR Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TrEMBL-Plants: tr|V7B491|V7B491_PHAVU Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; Found in the gene: LotjaGi5g1v0104700 LjG1.1_chr5 19535118 19548535 +
2 domain predictions
1 GO term
LotjaGi5g1v0104700.2
n.a. Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TAIR: AT3G24200.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6DF46|COQ6_XENTR Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; TrEMBL-Plants: tr|A0A0B2PND5|A0A0B2PND5_GLYSO Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; Found in the gene: LotjaGi5g1v0104700 LjG1.1_chr5 19535362 19548391 +
2 domain predictions
1 GO term
LotjaGi5g1v0349500.1
n.a. 3-hydroxybenzoate 6-hydroxylase 1; TAIR: AT5G05320.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6F6Y2|HPXO_ACIAD FAD-dependent urate hydroxylase; TrEMBL-Plants: tr|I3S2G7|I3S2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0349500 LjG1.1_chr5 66494386 66501245 -
2 domain predictions
1 GO term
LotjaGi5g1v0349500.2
n.a. 6-hydroxynicotinate 3-monooxygenase; TAIR: AT4G38540.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|C3VEQ2|ZEP_ONCHC Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I3S2G7|I3S2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0349500 LjG1.1_chr5 66494438 66523787 -
2 domain predictions
1 GO term
LotjaGi5g1v0349500.3
n.a. 3-hydroxybenzoate 6-hydroxylase; TAIR: AT4G38540.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q6F6Y2|HPXO_ACIAD FAD-dependent urate hydroxylase; TrEMBL-Plants: tr|I3S2G7|I3S2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0349500 LjG1.1_chr5 66494438 66523787 -
2 domain predictions
1 GO term