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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003961
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.619s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v0766400.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like isoform X2 [Cicer arietinum] gi|502163798|ref|XP_004512953.1| chr2 11913710 11924137 -
4 domain predictions
1 GO term
Lj4g3v1909920.1
n.a. PREDICTED: bifunctional purple acid phosphatase 26-like isoform X1 [Cicer arietinum] gi|502151434|ref|XP_004508439.1| chr4 27059484 27065168 -
2 domain predictions
1 GO term
Lj4g3v2120360.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356562279|ref|XP_003549399.1| chr4 28973071 28978104 +
6 domain predictions
1 GO term
Lj4g3v3093980.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356527799|ref|XP_003532494.1| chr4 41050117 41056668 +
5 domain predictions
1 GO term
LotjaGi2g1v0212600.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66100435 66110334 -
3 domain predictions
1 GO term
LotjaGi2g1v0212600.2
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66100900 66109952 -
4 domain predictions
1 GO term
LotjaGi2g1v0212600.3
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66100946 66104749 -
4 domain predictions
1 GO term
LotjaGi2g1v0212600.4
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66101263 66104022 -
4 domain predictions
1 GO term
LotjaGi4g1v0278700.1
n.a. Purple acid phosphatase; TAIR: AT5G34850.1 purple acid phosphatase 26; Swiss-Prot: sp|Q949Y3|PPA26_ARATH Bifunctional purple acid phosphatase 26; TrEMBL-Plants: tr|V7CA52|V7CA52_PHAVU Purple acid phosphatase; Found in the gene: LotjaGi4g1v0278700 LjG1.1_chr4 64887484 64893630 -
2 domain predictions
1 GO term
LotjaGi4g1v0278700.3
n.a. Purple acid phosphatase; TAIR: AT5G34850.1 purple acid phosphatase 26; Swiss-Prot: sp|Q949Y3|PPA26_ARATH Bifunctional purple acid phosphatase 26; TrEMBL-Plants: tr|V7CA52|V7CA52_PHAVU Purple acid phosphatase; Found in the gene: LotjaGi4g1v0278700 LjG1.1_chr4 64889000 64892788 -
2 domain predictions
1 GO term
LotjaGi4g1v0278700.4
n.a. Purple acid phosphatase; TAIR: AT5G34850.1 purple acid phosphatase 26; Swiss-Prot: sp|Q949Y3|PPA26_ARATH Bifunctional purple acid phosphatase 26; TrEMBL-Plants: tr|V7CA52|V7CA52_PHAVU Purple acid phosphatase; Found in the gene: LotjaGi4g1v0278700 LjG1.1_chr4 64889017 64892683 -
2 domain predictions
1 GO term
LotjaGi4g1v0302100.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.3 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100 LjG1.1_chr4 67714085 67719869 +
5 domain predictions
1 GO term
LotjaGi4g1v0302100.2
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.1 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100 LjG1.1_chr4 67715889 67719167 +
5 domain predictions
1 GO term
LotjaGi4g1v0451000.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 LjG1.1_chr4 82310720 82317544 +
4 domain predictions
1 GO term
LotjaGi4g1v0451000.2
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 LjG1.1_chr4 82314061 82316761 +
4 domain predictions
1 GO term
LotjaGi4g1v0451000.3
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 LjG1.1_chr4 82314172 82316761 +
4 domain predictions
1 GO term