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IPR003961

Description

IPR003961 is a Fibronectin type III.

<p>Fibronectin is a dimeric glycoprotein composed of disulfide-linked subunits with a molecular weight of 220-250kDa each. It is involved in cell adhesion, cell morphology, thrombosis, cell migration, and embryonic differentiation. Fibronectin is a modular protein composed of homologous repeats of three prototypical types of domains known as types I, II, and III [[cite:PUB00072954]].</p> <p>Fibronectin type-III (FN3) repeats are both the largest and the most common of the fibronectin subdomains. Domains homologous to FN3 repeats have been found in various animal protein families including other extracellular-matrix molecules, cell-surface receptors, enzymes, and muscle proteins [[cite:PUB00018327]]. Structures of individual FN3 domains have revealed a conserved β-sandwich fold with one β-sheet containing four strands and the other sheet containing three strands (see for example [pdbe:1TEN]) [[cite:PUB00018328]]. This fold is topologically very similar to that of Ig-like domains, with a notable difference being the lack of a conserved disulfide bond in FN3 domains. Distinctive hydrophobic core packing and the lack of detectable sequence homology between immunoglobulin and FN3 domains suggest, however, that these domains are not evolutionarily related [[cite:PUB00018328]].</p> <p>FN3 exhibits functional as well as structural modularity. Sites of interaction with other molecules have been mapped to short stretch of amino acids such as the Arg-Gly-Asp (RGD) sequence found in various FN3 domains. The RGD sequences is involved in interactions with integrin. Small peptides containing the RGD sequence can modulate a variety of cell adhesion invents associated with thrombosis, inflammation, and tumour metastasis. These properties have led to the investigation of RGD peptides and RGD peptide analogues as potential therapeutic agents [[cite:PUB00018329]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
PREDICTED: protein VERNALIZATION INSENSITIVE 3-like isoform X2 [Cicer arietinum] gi|502163798|ref|XP_004512953.1| 9
PREDICTED: bifunctional purple acid phosphatase 26-like isoform X1 [Cicer arietinum] gi|502151434|ref|XP_004508439.1| 23
PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356562279|ref|XP_003549399.1| 14
PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356527799|ref|XP_003532494.1| 13
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 13
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 14
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 14
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 14
Purple acid phosphatase; TAIR: AT5G34850.1 purple acid phosphatase 26; Swiss-Prot: sp|Q949Y3|PPA26_ARATH Bifunctional purple acid phosphatase 26; TrEMBL-Plants: tr|V7CA52|V7CA52_PHAVU Purple acid phosphatase; Found in the gene: LotjaGi4g1v0278700 25
Purple acid phosphatase; TAIR: AT5G34850.1 purple acid phosphatase 26; Swiss-Prot: sp|Q949Y3|PPA26_ARATH Bifunctional purple acid phosphatase 26; TrEMBL-Plants: tr|V7CA52|V7CA52_PHAVU Purple acid phosphatase; Found in the gene: LotjaGi4g1v0278700 25
Purple acid phosphatase; TAIR: AT5G34850.1 purple acid phosphatase 26; Swiss-Prot: sp|Q949Y3|PPA26_ARATH Bifunctional purple acid phosphatase 26; TrEMBL-Plants: tr|V7CA52|V7CA52_PHAVU Purple acid phosphatase; Found in the gene: LotjaGi4g1v0278700 25
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.3 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100 15
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.1 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100 15
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 14
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 14
Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.25