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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004242
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.774s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0019169.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr0 7583708 7586300 -
2 domain predictions
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Lj0g3v0125179.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr0 56183209 56185214 +
2 domain predictions
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Lj0g3v0125189.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr0 56183209 56185049 +
2 domain predictions
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Lj1g3v2264840.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr1 26544838 26549702 +
2 domain predictions
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LotjaGi1g1v0115500_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G07610.3 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P14779|CPXB_BACMB Bifunctional cytochrome P450/NADPH--P450 reductase; TrEMBL-Plants: tr|M1AR79|M1AR79_SOLTU Uncharacterized protein; Found in the gene: LotjaGi1g1v0115500_LC LjG1.1_chr1 18132362 18133549 +
2 domain predictions
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LotjaGi1g1v0151900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|Q08930|YP191_YEAST Ubiquitin carboxyl-terminal hydrolase MIY1; TrEMBL-Plants: tr|A5BU47|A5BU47_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0151900_LC LjG1.1_chr1 26157703 26158625 -
2 domain predictions
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LotjaGi1g1v0162400_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G43410.1 RNA binding protein; Swiss-Prot: sp|Q60L58|SIR2_CAEBR NAD-dependent protein deacetylase sir-2.1; TrEMBL-Plants: tr|A0A1J6KY29|A0A1J6KY29_NICAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0162400_LC LjG1.1_chr1 30535221 30544298 +
2 domain predictions
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LotjaGi1g1v0423900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G11610.1 Exostosin family protein; Swiss-Prot: sp|Q9CF42|RBSK_LACLA Ribokinase; TrEMBL-Plants: tr|A0A8Y2|A0A8Y2_IPOTF Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0423900_LC LjG1.1_chr1 91788176 91789365 -
2 domain predictions
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LotjaGi2g1v0052000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G38240.3 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; Swiss-Prot: sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0052000_LC LjG1.1_chr2 10228876 10230591 +
2 domain predictions
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LotjaGi2g1v0142900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G29650.3 phosphate transporter 4;1; Swiss-Prot: sp|Q0AUH7|EFG2_SYNWW Elongation factor G 2; TrEMBL-Plants: tr|A0A151R5D1|A0A151R5D1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0142900_LC LjG1.1_chr2 51874400 51874927 +
2 domain predictions
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LotjaGi2g1v0163200_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0163200_LC LjG1.1_chr2 56960602 56962687 -
2 domain predictions
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LotjaGi2g1v0194900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G32450.1 Calcium-binding tetratricopeptide family protein; Swiss-Prot: sp|Q1RHI2|RECN_RICBR DNA repair protein RecN; TrEMBL-Plants: tr|A0A151R5D1|A0A151R5D1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0194900_LC LjG1.1_chr2 62790067 62796535 +
2 domain predictions
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LotjaGi2g1v0194900_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G32450.1 Calcium-binding tetratricopeptide family protein; Swiss-Prot: sp|Q1RHI2|RECN_RICBR DNA repair protein RecN; TrEMBL-Plants: tr|A0A151R5D1|A0A151R5D1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0194900_LC LjG1.1_chr2 62790240 62796232 +
2 domain predictions
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LotjaGi2g1v0194900_LC.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G32450.1 Calcium-binding tetratricopeptide family protein; Swiss-Prot: sp|Q1RHI2|RECN_RICBR DNA repair protein RecN; TrEMBL-Plants: tr|A0A151R5D1|A0A151R5D1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0194900_LC LjG1.1_chr2 62790266 62796223 +
2 domain predictions
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LotjaGi2g1v0194900_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G78915.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5B122|RT106_EMENI Histone chaperone rtt106; TrEMBL-Plants: tr|A0A151R5D1|A0A151R5D1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0194900_LC LjG1.1_chr2 62792827 62794614 +
2 domain predictions
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LotjaGi2g1v0307000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G54160.1 RNI-like superfamily protein; Swiss-Prot: sp|Q17043|APLY_APLKU Aplysianin-A; TrEMBL-Plants: tr|A0A151UDP2|A0A151UDP2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0307000_LC LjG1.1_chr2 78069729 78071605 +
2 domain predictions
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LotjaGi3g1v0050700_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G19280.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9NRA2|S17A5_HUMAN Sialin; TrEMBL-Plants: tr|A0A151RB78|A0A151RB78_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0050700_LC LjG1.1_chr3 5283122 5288100 -
2 domain predictions
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LotjaGi4g1v0134000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G38240.3 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0134000_LC LjG1.1_chr4 19532416 19534131 +
2 domain predictions
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LotjaGi4g1v0186800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|A0LSY4|SYL_ACIC1 Leucine--tRNA ligase; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0186800_LC LjG1.1_chr4 42283986 42285796 -
2 domain predictions
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LotjaGi4g1v0192300_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G19110.1 inter-alpha-trypsin inhibitor heavy chain-like protein; Swiss-Prot: sp|Q9NRA2|S17A5_HUMAN Sialin; TrEMBL-Plants: tr|A0A151RB78|A0A151RB78_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0192300_LC LjG1.1_chr4 44231146 44232074 +
2 domain predictions
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LotjaGi5g1v0111000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; TrEMBL-Plants: tr|I1K2I9|I1K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0111000_LC LjG1.1_chr5 22019034 22019355 -
2 domain predictions
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LotjaGi6g1v0009900_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G24010.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|B8MZA3|PURA_ASPFN Adenylosuccinate synthetase; TrEMBL-Plants: tr|A0A1J6KFE9|A0A1J6KFE9_NICAT Uncharacterized protein; Found in the gene: LotjaGi6g1v0009900_LC LjG1.1_chr6 1856002 1865394 +
2 domain predictions
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LotjaGi6g1v0009900_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G24010.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|B8MZA3|PURA_ASPFN Adenylosuccinate synthetase; TrEMBL-Plants: tr|A0A1J6KFE9|A0A1J6KFE9_NICAT Uncharacterized protein; Found in the gene: LotjaGi6g1v0009900_LC LjG1.1_chr6 1856019 1865439 +
2 domain predictions
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LotjaGi6g1v0026600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G38240.3 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; Swiss-Prot: sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0026600_LC LjG1.1_chr6 4701376 4703076 -
2 domain predictions
 –