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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004839
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We have found 150 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.735s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0016659.1
n.a. PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] gi|356517746|ref|XP_003527547.1| chr0 6432502 6456406 +
2 domain predictions
2 GO terms
Lj0g3v0064019.1
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum] gi|502082746|ref|XP_004487261.1| chr0 21891829 21893866 -
2 domain predictions
2 GO terms
Lj0g3v0064019.2
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum] gi|502082746|ref|XP_004487261.1| chr0 21895817 21898199 -
2 domain predictions
2 GO terms
Lj0g3v0083999.1
n.a. PREDICTED: aspartate aminotransferase, mitochondrial-like [Cicer arietinum] gi|502143818|ref|XP_004505477.1| chr0 33417737 33418460 +
2 domain predictions
2 GO terms
Lj0g3v0091189.1
n.a. serine palmitoyltransferase [Lotus japonicus] gi|27753609|dbj|BAC55228.1| chr0 37724437 37733874 +
2 domain predictions
2 GO terms
Lj0g3v0135259.1
n.a. Kynurenine-oxoglutarate transaminase [Medicago truncatula] gi|357461581|ref|XP_003601072.1| chr0 62101605 62102846 +
2 domain predictions
2 GO terms
Lj0g3v0209349.1
n.a. PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] gi|356517746|ref|XP_003527547.1| chr0 104954159 104967411 -
2 domain predictions
2 GO terms
Lj0g3v0210649.1
n.a. PREDICTED: probable aminotransferase ACS12-like [Glycine max] gi|356529344|ref|XP_003533255.1| chr0 105964544 105967633 -
2 domain predictions
2 GO terms
Lj0g3v0243559.1
n.a. 1-aminocyclopropane-1-carboxylic acid synthase [Vigna radiata] gi|5231127|gb|AAD41083.1|AF151961_1 chr0 126342901 126344819 +
2 domain predictions
2 GO terms
Lj0g3v0266309.1
n.a. Serine palmitoyltransferase [Medicago truncatula] gi|357490955|ref|XP_003615765.1| chr0 137879358 137887728 -
2 domain predictions
2 GO terms
Lj1g3v0652040.1
n.a. AGD2-like defense response protein 1 [Theobroma cacao] gi|508724214|gb|EOY16111.1| chr1 8482742 8484063 -
2 domain predictions
2 GO terms
Lj1g3v0785940.1
n.a. PREDICTED: probable N-succinyldiaminopimelate aminotransferase DapC-like [Cicer arietinum] gi|502126699|ref|XP_004499406.1| chr1 10354727 10357530 +
2 domain predictions
2 GO terms
Lj1g3v0786110.1
n.a. PREDICTED: probable N-succinyldiaminopimelate aminotransferase DapC-like [Cicer arietinum] gi|502126699|ref|XP_004499406.1| chr1 10410374 10412839 +
2 domain predictions
2 GO terms
Lj1g3v1781060.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Glycine max] gi|356509801|ref|XP_003523634.1| chr1 20637615 20638289 +
2 domain predictions
2 GO terms
Lj1g3v1781070.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Glycine max] gi|356509801|ref|XP_003523634.1| chr1 20639315 20639564 +
2 domain predictions
2 GO terms
Lj1g3v2050900.1
n.a. aspartate aminotransferase [Lotus japonicus] gi|1122288|emb|CAA63894.1| chr1 24180568 24184926 -
2 domain predictions
2 GO terms
Lj1g3v2050910.1
n.a. n.a. chr1 24180573 24189258 -
2 domain predictions
2 GO terms
Lj1g3v2050910.4
n.a. n.a. chr1 24183314 24185029 -
2 domain predictions
2 GO terms
Lj1g3v2766570.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1-like [Cicer arietinum] gi|502105402|ref|XP_004492797.1| chr1 31679690 31683659 -
2 domain predictions
2 GO terms
Lj2g3v0909590.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 7-like [Glycine max] gi|356523125|ref|XP_003530192.1| chr2 13808743 13811100 -
2 domain predictions
2 GO terms
Lj2g3v1068510.1
n.a. PREDICTED: methionine S-methyltransferase-like [Glycine max] gi|356541838|ref|XP_003539379.1| chr2 17081704 17090768 +
2 domain predictions
2 GO terms
Lj2g3v1376560.1
n.a. aspartate aminotransferase [Glycine max] gi|351721732|ref|NP_001237987.1| chr2 21672646 21676669 -
2 domain predictions
2 GO terms
Lj2g3v1415440.1
n.a. Alanine aminotransferase [Medicago truncatula] gi|357485703|ref|XP_003613139.1| chr2 22460574 22467388 +
2 domain predictions
2 GO terms
Lj2g3v1415440.2
n.a. Alanine aminotransferase [Medicago truncatula] gi|357485703|ref|XP_003613139.1| chr2 22462319 22467388 +
2 domain predictions
2 GO terms
Lj2g3v1415440.3
n.a. Alanine aminotransferase [Medicago truncatula] gi|357485703|ref|XP_003613139.1| chr2 22464017 22467388 +
2 domain predictions
2 GO terms
Lj2g3v1982940.1
n.a. 1-aminocyclopropane-1-carboxylate synthase [Medicago truncatula] gi|357482497|ref|XP_003611535.1| chr2 28860964 28863270 +
2 domain predictions
2 GO terms
Lj2g3v2002870.1
n.a. PREDICTED: probable aminotransferase ACS10-like [Cicer arietinum] gi|502160097|ref|XP_004511632.1| chr2 30525532 30528787 -
2 domain predictions
2 GO terms
Lj2g3v2051190.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Glycine max] gi|356539620|ref|XP_003538294.1| chr2 31079337 31082073 -
2 domain predictions
2 GO terms
Lj2g3v2114150.1
n.a. PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Glycine max] gi|356559575|ref|XP_003548074.1| chr2 31857912 31863164 +
2 domain predictions
2 GO terms
Lj3g3v0428970.1
n.a. Tyrosine aminotransferase [Medicago truncatula] gi|357516533|ref|XP_003628555.1| chr3 4162385 4166277 -
2 domain predictions
2 GO terms
Lj3g3v0618040.1
n.a. aspartate aminotransferase [Lotus japonicus] gi|1122288|emb|CAA63894.1| chr3 6672128 6672435 -
2 domain predictions
2 GO terms
Lj3g3v0618050.1
n.a. aspartate aminotransferase [Lotus japonicus] gi|1122288|emb|CAA63894.1| chr3 6672128 6672744 -
2 domain predictions
2 GO terms
Lj3g3v0807810.2
n.a. PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] gi|356508270|ref|XP_003522881.1| chr3 9792074 9804545 +
2 domain predictions
2 GO terms
Lj3g3v1517550.1
n.a. Aspartate aminotransferase [Medicago truncatula] gi|357474641|ref|XP_003607605.1| chr3 19376168 19388223 +
2 domain predictions
2 GO terms
Lj3g3v1517550.2
n.a. PREDICTED: aspartate aminotransferase, mitochondrial-like [Cicer arietinum] gi|502143818|ref|XP_004505477.1| chr3 19376168 19389243 +
2 domain predictions
2 GO terms
Lj3g3v2247060.1
n.a. PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like isoform X2 [Cicer arietinum] gi|502147677|ref|XP_004506873.1| chr3 27745697 27752339 -
2 domain predictions
2 GO terms
Lj3g3v2575550.1
n.a. PREDICTED: alanine aminotransferase 2, mitochondrial-like [Cicer arietinum] gi|502156630|ref|XP_004510570.1| chr3 31229431 31234725 +
2 domain predictions
2 GO terms
Lj3g3v2575550.2
n.a. PREDICTED: alanine aminotransferase 2, mitochondrial-like [Cicer arietinum] gi|502156630|ref|XP_004510570.1| chr3 31229431 31254647 +
2 domain predictions
2 GO terms
Lj3g3v2575550.3
n.a. Alanine aminotransferase 2 [Theobroma cacao] gi|508780134|gb|EOY27390.1| chr3 31249890 31254647 +
2 domain predictions
2 GO terms
Lj3g3v2810130.1
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X2 [Cicer arietinum] gi|502082749|ref|XP_004487262.1| chr3 34651123 34663609 +
2 domain predictions
2 GO terms
Lj3g3v2810130.2
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum] gi|502082746|ref|XP_004487261.1| chr3 34651123 34654360 +
2 domain predictions
2 GO terms
Lj3g3v2810130.4
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum] gi|502082746|ref|XP_004487261.1| chr3 34651123 34659154 +
2 domain predictions
2 GO terms
Lj3g3v3430110.1
n.a. PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] gi|356508270|ref|XP_003522881.1| chr3 42035421 42047005 +
2 domain predictions
2 GO terms
Lj4g3v0338190.1
n.a. PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Glycine max] gi|356525892|ref|XP_003531555.1| chr4 4292849 4296644 +
2 domain predictions
2 GO terms
Lj4g3v0412700.1
n.a. PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Cicer arietinum] gi|502142297|ref|XP_004504888.1| chr4 5388563 5403348 -
2 domain predictions
2 GO terms
Lj4g3v0706600.1
n.a. 1-aminocyclopropane-1-carboxylic acid synthase [Vigna radiata] gi|5231127|gb|AAD41083.1|AF151961_1 chr4 11651297 11652844 -
2 domain predictions
2 GO terms
Lj4g3v1287390.1
n.a. PREDICTED: probable aminotransferase ACS10-like [Cicer arietinum] gi|502160097|ref|XP_004511632.1| chr4 19008964 19012219 +
2 domain predictions
2 GO terms
Lj4g3v2819890.1
n.a. PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cicer arietinum] gi|502140078|ref|XP_004504047.1| chr4 37579976 37583899 +
2 domain predictions
2 GO terms
Lj4g3v2990130.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Cicer arietinum] gi|502139181|ref|XP_004503673.1| chr4 39511981 39515462 -
2 domain predictions
2 GO terms
Lj4g3v3017360.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 7-like [Glycine max] gi|356523125|ref|XP_003530192.1| chr4 40489493 40491858 +
2 domain predictions
2 GO terms