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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004883
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 107 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.024s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0077969.1
n.a. PREDICTED: LOB domain-containing protein 11-like [Glycine max] gi|356547196|ref|XP_003542002.1| chr0 30005915 30008327 +
3 domain predictions
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Lj0g3v0096669.1
n.a. PREDICTED: LOB domain-containing protein 16-like [Glycine max] gi|356572251|ref|XP_003554283.1| chr0 40784359 40785904 -
3 domain predictions
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Lj0g3v0116339.1
n.a. PREDICTED: LOB domain-containing protein 6-like [Glycine max] gi|356546320|ref|XP_003541575.1| chr0 51179020 51179902 +
3 domain predictions
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Lj0g3v0134509.1
n.a. PREDICTED: LOB domain-containing protein 41-like [Glycine max] gi|356569068|ref|XP_003552728.1| chr0 61643761 61644030 -
3 domain predictions
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Lj0g3v0252429.1
n.a. PREDICTED: LOB domain-containing protein 22-like [Cicer arietinum] gi|502154716|ref|XP_004509801.1| chr0 130885507 130886175 +
3 domain predictions
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Lj0g3v0262869.1
n.a. PREDICTED: LOB domain-containing protein 33-like [Glycine max] gi|356499118|ref|XP_003518390.1| chr0 136342228 136343577 +
3 domain predictions
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Lj0g3v0287339.1
n.a. PREDICTED: LOB domain-containing protein 12-like [Glycine max] gi|356537602|ref|XP_003537315.1| chr0 149290253 149292382 -
3 domain predictions
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Lj0g3v0327669.2
n.a. PREDICTED: LOB domain-containing protein 36-like [Cucumis sativus] gi|449461471|ref|XP_004148465.1| chr0 171306038 171308116 -
3 domain predictions
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Lj0g3v0341169.1
n.a. PREDICTED: LOB domain-containing protein 21-like [Glycine max] gi|356568164|ref|XP_003552283.1| chr0 178746540 178747490 +
3 domain predictions
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Lj0g3v0348179.1
n.a. PREDICTED: LOB domain-containing protein 27-like isoform X1 [Cicer arietinum] gi|502152162|ref|XP_004508794.1| chr0 182719754 182720812 +
3 domain predictions
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Lj1g3v0051030.1
n.a. PREDICTED: LOB domain-containing protein 38-like [Glycine max] gi|356574309|ref|XP_003555291.1| chr1 305504 306189 -
3 domain predictions
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Lj1g3v0318690.1
n.a. elongated petiolule 1 [Lotus japonicus] gi|388892253|gb|AFK81064.1| chr1 3909197 3911579 +
3 domain predictions
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Lj1g3v2581160.1
n.a. PREDICTED: LOB domain-containing protein 18-like [Glycine max] gi|356568282|ref|XP_003552342.1| chr1 29708149 29712230 +
3 domain predictions
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Lj1g3v3317390.1
n.a. PREDICTED: LOB domain-containing protein 41-like [Glycine max] gi|356569068|ref|XP_003552728.1| chr1 37138574 37140105 +
3 domain predictions
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Lj1g3v3646480.1
n.a. PREDICTED: LOB domain-containing protein 25-like isoform X1 [Cicer arietinum] gi|502102138|ref|XP_004491980.1| chr1 42127566 42129253 -
3 domain predictions
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Lj1g3v3978270.1
n.a. PREDICTED: LOB domain-containing protein 20-like [Glycine max] gi|356537260|ref|XP_003537147.1| chr1 47233561 47234493 +
3 domain predictions
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Lj1g3v4483420.1
n.a. PREDICTED: LOB domain-containing protein 16-like [Glycine max] gi|356572251|ref|XP_003554283.1| chr1 52511579 52513553 +
3 domain predictions
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Lj1g3v4483440.1
n.a. PREDICTED: LOB domain-containing protein 29-like [Glycine max] gi|356505001|ref|XP_003521281.1| chr1 52520386 52521751 -
3 domain predictions
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Lj2g3v0738560.1
n.a. PREDICTED: LOB domain-containing protein 41-like [Glycine max] gi|356520597|ref|XP_003528948.1| chr2 11571193 11572367 +
3 domain predictions
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Lj2g3v0934070.1
n.a. PREDICTED: LOB domain-containing protein 25-like [Glycine max] gi|356573331|ref|XP_003554815.1| chr2 14947852 14950047 -
3 domain predictions
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Lj2g3v1436910.1
n.a. PREDICTED: LOB domain-containing protein 20-like [Glycine max] gi|356537260|ref|XP_003537147.1| chr2 22594697 22598868 -
3 domain predictions
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Lj2g3v1834030.1
n.a. PREDICTED: LOB domain-containing protein 36-like isoform X1 [Cicer arietinum] gi|502160941|ref|XP_004511963.1| chr2 27704207 27708071 -
3 domain predictions
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Lj2g3v1965100.1
n.a. PREDICTED: LOB domain-containing protein 37-like [Cicer arietinum] gi|502160700|ref|XP_004511855.1| chr2 28539006 28541539 -
3 domain predictions
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Lj2g3v1965110.1
n.a. PREDICTED: LOB domain-containing protein 38-like [Glycine max] gi|356496973|ref|XP_003517339.1| chr2 28539866 28541539 -
3 domain predictions
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Lj2g3v2412470.2
n.a. PREDICTED: LOB domain-containing protein 13-like [Glycine max] gi|356553156|ref|XP_003544924.1| chr2 34245618 34247391 -
3 domain predictions
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Lj2g3v2794420.1
n.a. lateral organ boundaries-like 1 [Lotus japonicus] gi|60476418|gb|AAX21348.1| chr2 36751723 36752861 -
3 domain predictions
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Lj2g3v2807730.1
n.a. LOB domain-containing protein [Medicago truncatula] gi|357492803|ref|XP_003616690.1| chr2 36864076 36865338 +
3 domain predictions
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Lj2g3v2827780.1
n.a. PREDICTED: LOB domain-containing protein 12-like [Glycine max] gi|356568049|ref|XP_003552226.1| chr2 36889713 36891886 +
3 domain predictions
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Lj2g3v2843700.1
n.a. LOB domain-containing protein [Medicago truncatula] gi|357492939|ref|XP_003616758.1| chr2 37143703 37147174 -
3 domain predictions
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Lj2g3v2843700.2
n.a. LOB domain-containing protein [Medicago truncatula] gi|357492939|ref|XP_003616758.1| chr2 37145216 37147682 -
3 domain predictions
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Lj2g3v3058520.1
n.a. Skp1/Ask1-like protein [Zantedeschia hybrid cultivar] gi|47176688|gb|AAT12490.1| chr2 39335556 39337661 +
3 domain predictions
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Lj3g3v0312140.1
n.a. LOB domain-containing protein 22 [Theobroma cacao] gi|508779869|gb|EOY27125.1| chr3 2349352 2358965 -
3 domain predictions
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Lj3g3v0397200.1
n.a. PREDICTED: LOB domain-containing protein 4-like [Glycine max] gi|356525770|ref|XP_003531496.1| chr3 3361602 3367051 -
3 domain predictions
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Lj3g3v2309890.1
n.a. PREDICTED: LOB domain-containing protein 1-like [Glycine max] gi|356539104|ref|XP_003538040.1| chr3 28108130 28110493 -
3 domain predictions
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Lj4g3v0668200.1
n.a. LOB domain-containing protein [Medicago truncatula] gi|357475151|ref|XP_003607861.1| chr4 10932361 10936133 +
3 domain predictions
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Lj4g3v0768520.1
n.a. PREDICTED: LOB domain-containing protein 38-like [Cicer arietinum] gi|502152746|ref|XP_004509073.1| chr4 12060346 12061933 +
3 domain predictions
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Lj4g3v1450980.1
n.a. PREDICTED: protein LATERAL ORGAN BOUNDARIES-like [Glycine max] gi|356513705|ref|XP_003525551.1| chr4 22447952 22450233 +
3 domain predictions
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Lj4g3v1600420.1
n.a. PREDICTED: LOB domain-containing protein 27-like isoform X1 [Cicer arietinum] gi|502152162|ref|XP_004508794.1| chr4 23583177 23584262 -
2 domain predictions
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Lj5g3v1050270.1
n.a. PREDICTED: LOB domain-containing protein 29-like [Cicer arietinum] gi|502115051|ref|XP_004495114.1| chr5 17132725 17134136 +
3 domain predictions
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Lj5g3v1050280.1
n.a. PREDICTED: LOB domain-containing protein 29-like [Glycine max] gi|356545837|ref|XP_003541340.1| chr5 17132725 17133905 +
3 domain predictions
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Lj5g3v1853060.1
n.a. PREDICTED: LOB domain-containing protein 1-like [Glycine max] gi|356535674|ref|XP_003536369.1| chr5 26348830 26350679 -
3 domain predictions
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Lj5g3v2099760.1
n.a. PREDICTED: LOB domain-containing protein 38-like [Glycine max] gi|356574309|ref|XP_003555291.1| chr5 30126051 30127668 +
3 domain predictions
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Lj6g3v0467050.1
n.a. PREDICTED: LOB domain-containing protein 12-like [Glycine max] gi|356568049|ref|XP_003552226.1| chr6 4546034 4547930 -
3 domain predictions
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Lj6g3v1689520.1
n.a. PREDICTED: LOB domain-containing protein 4-like [Glycine max] gi|356558043|ref|XP_003547318.1| chr6 18710836 18711805 -
3 domain predictions
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LotjaGi1g1v0027800.1
n.a. LOB domain-containing protein, putative; TAIR: AT3G26620.1 LOB domain-containing protein 23; Swiss-Prot: sp|P59467|LBD23_ARATH LOB domain-containing protein 23; TrEMBL-Plants: tr|G7K3J3|G7K3J3_MEDTR Lateral organ boundaries (LOB) domain protein; Found in the gene: LotjaGi1g1v0027800 LjG1.1_chr1 3367786 3368728 +
3 domain predictions
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LotjaGi1g1v0048300_LC.1
n.a. LOB domain family protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|I3SSE0|I3SSE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0048300_LC LjG1.1_chr1 6614623 6618154 -
3 domain predictions
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LotjaGi1g1v0071200.1
n.a. LOB domain protein; TAIR: AT2G30340.1 LOB domain-containing protein 13; Swiss-Prot: sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13; TrEMBL-Plants: tr|G7KH28|G7KH28_MEDTR LOB domain protein; Found in the gene: LotjaGi1g1v0071200 LjG1.1_chr1 10090049 10092851 +
3 domain predictions
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LotjaGi1g1v0074200.1
n.a. LOB domain-containing protein, putative; TAIR: AT2G30130.1 Lateral organ boundaries (LOB) domain family protein; Swiss-Prot: sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12; TrEMBL-Plants: tr|A0A1J7GQK8|A0A1J7GQK8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0074200 LjG1.1_chr1 10719016 10720341 -
3 domain predictions
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LotjaGi1g1v0075100.1
n.a. LOB domain-containing protein, putative; TAIR: AT3G11090.1 LOB domain-containing protein 21; Swiss-Prot: sp|Q9SRL8|LBD21_ARATH LOB domain-containing protein 21; TrEMBL-Plants: tr|Q4VPE9|Q4VPE9_LOTJA Lateral organ boundaries-like 1; Found in the gene: LotjaGi1g1v0075100 LjG1.1_chr1 10847663 10848746 +
3 domain predictions
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LotjaGi1g1v0087900.1
n.a. LOB domain protein; TAIR: AT5G06080.1 LOB domain-containing protein 33; Swiss-Prot: sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33; TrEMBL-Plants: tr|K7KAM4|K7KAM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0087900 LjG1.1_chr1 12736991 12738528 -
3 domain predictions
 –