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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0075100 |
| Transcript ID | LotjaGi1g1v0075100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LOB domain-containing protein, putative; TAIR: AT3G11090.1 LOB domain-containing protein 21; Swiss-Prot: sp|Q9SRL8|LBD21_ARATH LOB domain-containing protein 21; TrEMBL-Plants: tr|Q4VPE9|Q4VPE9_LOTJA Lateral organ boundaries-like 1; Found in the gene: LotjaGi1g1v0075100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10847663..10848746) extracted from Lotus japonicus Gifu genome v1.2.
TGATAAGTGAATTATTTGGACCGAGATGTGTATGTTCGTGACTCGCAGTAAAATGACAGCATTGGCCCATACACATCTCA AAATCTAGCACCTTCAGCTAAGCTAGTAGGCTAGGAATTGTGGTTGCCCTTAAATAGCGCTTGTGCAAGATACCTATAGA GAGAACTATAGATTTATCAGCACAACAAGTAGTGAGGATAATAGAAGAGGGAAAGTGGGTGTGAGTGAAACAGAAAGCCA TGAAGGGTTATGAACCACGATCAAGCTCTTCTTGTGCAGCCTGCAAGTTCTTGAAGAGAAGATGCATACCCAATTGCATA TTCGCACCTTACTTTCGCTCCGATGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTGTTTGGAGCCAGCAACGTGAGCAA GATCCTGGTCGAGGTTCCGGAGGAGCAGAGGGAGGACACGGTGAATTCTCTAGCTTATGAGGCAGAGGCAAGGCTCAAGG ACCCTGTTTATGGATGCATAGGTGCCATAGCAATGTTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCT AAGGATCGCCTCGCTCACGCGGCTGCTACTGCTGCTGCTACTACTACTGCTACCACTACCACTACCACCGCTTTTTCTGG TGATATCTTGAACTCCCATGTTAGCTTGCCACCGTTCCCTGAGTTTTCCACTTGCTGTGATTTCAATGACAATTTTAGCC ACAACTCTTCATCTCAATCATGGAGAACACATGAAACGGTGGATGATTTCATTCAAATCCCATATATATTTTGATGTTAT TATCACCCCTGCACCTCTCTTATGTTGTAATTGTTCTGAATTTTCAATTCTCATCAATCAAAAGGTGTGACTTTGCTGTA TATATATGCTAATAAATAAGAACCCCATGAGTGAATTTGTCTTAGTTGAAAATTTTGGATTTCAATATTTCCTATACTAT TGTAAGACCCTGGAAATGATTATTTTTAGCCTTTATAGTTTCACTTTTTCATAGTAACAGAATTTATGTGCTTCTCTTGC TTAGCTTGGTAATGTGATAGCATGTTTGAAAAAATCTTCATTCT
CDS sequence (LotjaGi1g1v0075100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTTATGAACCACGATCAAGCTCTTCTTGTGCAGCCTGCAAGTTCTTGAAGAGAAGATGCATACCCAATTGCAT ATTCGCACCTTACTTTCGCTCCGATGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTGTTTGGAGCCAGCAACGTGAGCA AGATCCTGGTCGAGGTTCCGGAGGAGCAGAGGGAGGACACGGTGAATTCTCTAGCTTATGAGGCAGAGGCAAGGCTCAAG GACCCTGTTTATGGATGCATAGGTGCCATAGCAATGTTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGC TAAGGATCGCCTCGCTCACGCGGCTGCTACTGCTGCTGCTACTACTACTGCTACCACTACCACTACCACCGCTTTTTCTG GTGATATCTTGAACTCCCATGTTAGCTTGCCACCGTTCCCTGAGTTTTCCACTTGCTGTGATTTCAATGACAATTTTAGC CACAACTCTTCATCTCAATCATGGAGAACACATGAAACGGTGGATGATTTCATTCAAATCCCATATATATTTTGA
Protein sequence (LotjaGi1g1v0075100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLK DPVYGCIGAIAMLQRKMVELQHDLAIAKDRLAHAAATAAATTTATTTTTTAFSGDILNSHVSLPPFPEFSTCCDFNDNFS HNSSSQSWRTHETVDDFIQIPYIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 3.2E-92 | – | |
| PANTHER | 1 | 183 | 183 | 3.2E-92 | – | |
| ProSiteProfiles | 10 | 111 | 102 | 25.407 | ||
| Pfam | 11 | 108 | 98 | 3.2E-38 | ||
| Coils | 90 | 110 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0075100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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